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550
K (2005) Polytomies and Bayesian phylogenetic inference. Syst Biol 54
"... 1 Abstract — Bayesian phylogenetic analyses are now very popular in systematics and molecular evolution because they allow the use of much more realistic models than currently possible with maximum likelihood methods. There is, however, a growing number of examples in which large Bayesian posterior ..."
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Cited by 60 (0 self)
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1 Abstract — Bayesian phylogenetic analyses are now very popular in systematics and molecular evolution because they allow the use of much more realistic models than currently possible with maximum likelihood methods. There is, however, a growing number of examples in which large Bayesian posterior clade probabilities are associated with very short edge lengths and low values for non-Bayesian measures of support such as non-parametric bootstrapping. For the four-taxon case when the true tree is the star phylogeny, Bayesian analyses become increasingly unpredictable in their preference for one of the three possible
Credit and Banking in a DSGE Model of the Euro Area
, 2009
"... This paper studies the role of credit-supply factors in business cycle fluctuations. To this end, an imperfectly competitive banking sector is introduced into a DSGE model with financial frictions. Banks issue collateralized loans to both households and firms, obtain funding via deposits and accumul ..."
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Cited by 58 (0 self)
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This paper studies the role of credit-supply factors in business cycle fluctuations. To this end, an imperfectly competitive banking sector is introduced into a DSGE model with financial frictions. Banks issue collateralized loans to both households and firms, obtain funding via deposits and accumulate capital out of retained earnings. Margins charged on loans depend on bank capital-to-assets ratio and on the degree of interest rate stickiness. Bank balance-sheet constraints establish a link between the business cycle, which affects bank profits and thus capital, and the supply and the cost of loans. The model is estimated with Bayesian techniques using data for the euro area. The analysis delivers the following results. First, the existence of a banking sector partially attenuates the effects of demand shocks, while it helps propagating supply shocks. Second, shocks originating in the banking sector explain the largest fraction of the fall of output in 2008 in the euro area, while macroeconomic shocks played a limited role. Third, an unexpected destruction of bank capital has a substantial impact on the real economy and particularly on investment.
Sticky Information in General Equilibrium
- Journal of the European Economic Association
, 2007
"... This paper develops and analyzes a general-equilibrium model with sticky information. The only rigidity in goods, labor, and financial markets is that agents are inattentive, sporadically updating their information sets, when setting prices, wages, and consumption. After presenting the ingredients o ..."
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Cited by 50 (6 self)
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This paper develops and analyzes a general-equilibrium model with sticky information. The only rigidity in goods, labor, and financial markets is that agents are inattentive, sporadically updating their information sets, when setting prices, wages, and consumption. After presenting the ingredients of such a model, the paper develops an algorithm to solve this class of models and uses it to study the model’s dynamic properties. It then estimates the parameters of the model using U.S. data on five key macroeconomic time series. It finds that information stickiness is present in all markets, and is especially pronounced for consumers and workers. Variance decompositions show that monetary policy and aggregate demand shocks account for most of the variance of inflation, output, and hours.
Genetic variation in preferences for giving and risk-taking
- Quarterly Journal of Economics
, 2009
"... In this paper, we use the classical twin design to provide estimates of genetic and environmental influences on experimentally elicited preferences for risk and giving. Using standard methods from behavior genetics, we find strong prima facie evidence that these preferences are broadly heritable and ..."
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Cited by 44 (3 self)
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In this paper, we use the classical twin design to provide estimates of genetic and environmental influences on experimentally elicited preferences for risk and giving. Using standard methods from behavior genetics, we find strong prima facie evidence that these preferences are broadly heritable and our estimates suggest that genetic differences explain approximately twenty percent of individual vari-ation. The results thus shed light on an important source of individual variation in preferences, a source that has hitherto been largely neglected in the economics literature. I.
Learn From Thy Neighbor: Parallel-Chain and Regional Adaptive MCMC
, 2009
"... Starting with the seminal paper of Haario, Saksman and Tamminen (Haario et al. (2001)), a substantial amount of work has been done to validate adaptive Markov chain Monte Carlo algorithms. In this paper we focus on two practical aspects of adaptive Metropolis samplers. First, we draw attention to th ..."
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Cited by 43 (18 self)
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Starting with the seminal paper of Haario, Saksman and Tamminen (Haario et al. (2001)), a substantial amount of work has been done to validate adaptive Markov chain Monte Carlo algorithms. In this paper we focus on two practical aspects of adaptive Metropolis samplers. First, we draw attention to the deficient performance of standard adaptation when the target distribution is multi-modal. We propose a parallel chain adaptation strategy that incorporates multiple Markov chains which are run in parallel. Second, we note that the current adaptive MCMC paradigm implicitly assumes that the adaptation is uniformly efficient on all regions of the state space. However, in many practical instances, different “optimal ” kernels are needed in different regions of the state space. We propose here a regional adaptation algorithm in which we account for possible errors made in defining the adaptation regions. This corresponds to the more realistic case in which one does not know exactly the optimal regions for adaptation. The methods focus on the random walk Metropolis sampling algorithm but their scope is much wider. We provide theoretical justification for the two adaptive approaches using the existent theory build for adaptive Markov chain Monte Carlo. We illustrate the performance of the methods using simulations and analyze a mixture model for real data using an algorithm that combines the two approaches.
Nonlinear unmixing of hyperspectral images using a generalized bilinear model
- IEEE Trans. Geosci. and Remote Sensing
"... Nonlinear models have recently shown interesting properties for spectral unmixing. This paper considers a generalized bilinear model recently introduced for unmixing hyperspectral images. Different algorithms are studied to estimate the parameters of this bilinear model. The positivity and sum-to-on ..."
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Cited by 41 (21 self)
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Nonlinear models have recently shown interesting properties for spectral unmixing. This paper considers a generalized bilinear model recently introduced for unmixing hyperspectral images. Different algorithms are studied to estimate the parameters of this bilinear model. The positivity and sum-to-one constraints for the abundances are ensured by the proposed algorithms. The performance of the resulting unmixing strategy is evaluated via simulations conducted on synthetic and real data. Index Terms — hyperspectral imagery, spectral unmixing, bilinear model, Bayesian inference, MCMC methods, gradient descent algorithm, least square algorithm. 1.
Erlbaum Associates
- Goal Attainment Scaling: Applications, theory, and
, 1994
"... statistical analysis of behavioral facilitation ..."
Estimation and Inference via Bayesian Simulation: An Introduction to Markov Chain Monte Carlo
, 2000
"... ..."
Transdimensional Markov Chains: A Decade of Progress and Future Perspectives
, 2005
"... The last 10 years have witnessed the development of sampling frameworks that permit the construction of Markov chains that simultaneously traverse both parameter and model space. Substantial methodological progress has been made during this period. In this article we present a survey of the current ..."
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Cited by 34 (3 self)
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The last 10 years have witnessed the development of sampling frameworks that permit the construction of Markov chains that simultaneously traverse both parameter and model space. Substantial methodological progress has been made during this period. In this article we present a survey of the current state of the art and evaluate some of the most recent advances in this field. We also discuss future research perspectives in the context of the drive to develop sampling mechanisms with high degrees of both efficiency and automation.