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226,137
A survey on tree edit distance and related problems
 Theor. Comput. Sci
, 2005
"... We survey the problem of comparing labeled trees based on simple local operations of deleting, inserting, and relabeling nodes. These operations lead to the tree edit distance, alignment distance, and inclusion problem. For each problem we review the results available and present, in detail, one or ..."
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Cited by 178 (1 self)
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We survey the problem of comparing labeled trees based on simple local operations of deleting, inserting, and relabeling nodes. These operations lead to the tree edit distance, alignment distance, and inclusion problem. For each problem we review the results available and present, in detail, one
Fast Folding and Comparison of RNA Secondary Structures (The Vienna RNA Package)
"... Computer codes for computation and comparison of RNA secondary structures, the Vienna RNA package, are presented, that are based on dynamic programming algorithms and aim at predictions of structures with minimum free energies as well as at computations of the equilibrium partition functions and bas ..."
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Cited by 812 (119 self)
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and base pairing probabilities. An efficient heuristic for the inverse folding problem of RNA is introduced. In addition we present compact and efficient programs for the comparison of RNA secondary structures based on tree editing and alignment. All computer codes are written in ANSI C. They include
Fast texture synthesis using treestructured vector quantization
, 2000
"... Figure 1: Our texture generation process takes an example texture patch (left) and a random noise (middle) as input, and modifies this random noise to make it look like the given example texture. The synthesized texture (right) can be of arbitrary size, and is perceived as very similar to the given ..."
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Cited by 562 (12 self)
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, but runs two orders of magnitude faster. This permits us to apply texture synthesis to problems where it has traditionally been considered impractical. In particular, we have applied it to constrained synthesis for image editing and temporal texture generation. Our algorithm is derived from Markov Random
Tree Edit Distance With Gaps
 INFORMATION PROCESSING LETTERS
, 2003
"... this paper is to study the definition of edit distances with convex gap weights for trees. In the special case of strings, this problem has yield to the definition of classical solutions: Galil and Giancarlo produced in [2] an algorithm in O(n log(n)), for example. For trees, standart edit distan ..."
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Cited by 6 (1 self)
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this paper is to study the definition of edit distances with convex gap weights for trees. In the special case of strings, this problem has yield to the definition of classical solutions: Galil and Giancarlo produced in [2] an algorithm in O(n log(n)), for example. For trees, standart edit
Analysis of tree edit distance algorithms
 In Proceedings of the 14th annual symposium on Combinatorial Pattern Matching (CPM
, 2003
"... Abstract. In this article, we study the behaviour of dynamic programming methods for the tree edit distance problem, such as [4] and [2]. We show that those two algorithms may be described in a more general framework of cover strategies. This analysis allows us to define a new tree edit distance alg ..."
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Cited by 18 (6 self)
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Abstract. In this article, we study the behaviour of dynamic programming methods for the tree edit distance problem, such as [4] and [2]. We show that those two algorithms may be described in a more general framework of cover strategies. This analysis allows us to define a new tree edit distance
ZTree: Zurich Toolbox for Readymade Economic Experiments, Working paper No
, 1999
"... 2.2.2 Startup of the Experimenter PC............................................................................................... 9 2.2.3 Startup of the Subject PCs....................................................................................................... 9 ..."
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Cited by 1956 (33 self)
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2.2.2 Startup of the Experimenter PC............................................................................................... 9 2.2.3 Startup of the Subject PCs....................................................................................................... 9
MEGA5: Molecular evolutionary genetics analysis using maximum . . .
, 2011
"... Comparative analysis of molecular sequence data is essential for reconstructing the evolutionary histories of species and inferring the nature and extent of selective forces shaping the evolution of genes and species. Here, we announce the release of Molecular Evolutionary Genetics Analysis version ..."
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Cited by 6858 (19 self)
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5 (MEGA5), which is a userfriendly software for mining online databases, building sequence alignments and phylogenetic trees, and using methods of evolutionary bioinformatics in basic biology, biomedicine, and evolution. The newest addition in MEGA5 is a collection of maximum likelihood (ML
Simple fast algorithms for the editing distance between trees and related problems
 SIAM J. COMPUT
, 1989
"... Ordered labeled trees are trees in which the lefttoright order among siblings is. significant. The distance between two ordered trees is considered to be the weighted number of edit operations (insert, delete, and modify) to transform one tree to another. The problem of approximate tree matching i ..."
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Cited by 405 (12 self)
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Ordered labeled trees are trees in which the lefttoright order among siblings is. significant. The distance between two ordered trees is considered to be the weighted number of edit operations (insert, delete, and modify) to transform one tree to another. The problem of approximate tree matching
A Guided Tour to Approximate String Matching
 ACM COMPUTING SURVEYS
, 1999
"... We survey the current techniques to cope with the problem of string matching allowing errors. This is becoming a more and more relevant issue for many fast growing areas such as information retrieval and computational biology. We focus on online searching and mostly on edit distance, explaining t ..."
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Cited by 584 (38 self)
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We survey the current techniques to cope with the problem of string matching allowing errors. This is becoming a more and more relevant issue for many fast growing areas such as information retrieval and computational biology. We focus on online searching and mostly on edit distance, explaining
Results 1  10
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226,137