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1,500,584
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
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Cited by 2176 (27 self)
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. The core of this method is a simple hillclimbing algorithm that adjusts tree topology and branch lengths simultaneously. This algorithm starts from an initial tree built by a fast distancebased method and modifies this tree to improve its likelihood at each iteration. Due to this simultaneous adjustment
Dynamic Conditional Correlation: A simple class of multivariate Generalized Autoregressive Conditional Heteroskedasticity Models.
 Journal of Business & Economic Statistics
, 2002
"... Abstract Time varying correlations are often estimated with Multivariate Garch models that are linear in squares and cross products of the data. A new class of multivariate models called dynamic conditional correlation (DCC) models is proposed. These have the flexibility of univariate GARCH models ..."
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Cited by 712 (17 self)
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coupled with parsimonious parametric models for the correlations. They are not linear but can often be estimated very simply with univariate or two step methods based on the likelihood function. It is shown that they perform well in a variety of situations and provide sensible empirical results.
Pegasos: Primal Estimated subgradient solver for SVM
"... We describe and analyze a simple and effective stochastic subgradient descent algorithm for solving the optimization problem cast by Support Vector Machines (SVM). We prove that the number of iterations required to obtain a solution of accuracy ɛ is Õ(1/ɛ), where each iteration operates on a singl ..."
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Cited by 541 (21 self)
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We describe and analyze a simple and effective stochastic subgradient descent algorithm for solving the optimization problem cast by Support Vector Machines (SVM). We prove that the number of iterations required to obtain a solution of accuracy ɛ is Õ(1/ɛ), where each iteration operates on a
Estimating the Support of a HighDimensional Distribution
, 1999
"... Suppose you are given some dataset drawn from an underlying probability distribution P and you want to estimate a "simple" subset S of input space such that the probability that a test point drawn from P lies outside of S is bounded by some a priori specified between 0 and 1. We propo ..."
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Cited by 781 (29 self)
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Suppose you are given some dataset drawn from an underlying probability distribution P and you want to estimate a "simple" subset S of input space such that the probability that a test point drawn from P lies outside of S is bounded by some a priori specified between 0 and 1. We
Convex Position Estimation in Wireless Sensor Networks
"... A method for estimating unknown node positions in a sensor network based exclusively on connectivityinduced constraints is described. Known peertopeer communication in the network is modeled as a set of geometric constraints on the node positions. The global solution of a feasibility problem fo ..."
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Cited by 495 (0 self)
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A method for estimating unknown node positions in a sensor network based exclusively on connectivityinduced constraints is described. Known peertopeer communication in the network is modeled as a set of geometric constraints on the node positions. The global solution of a feasibility problem
Fast and robust fixedpoint algorithms for independent component analysis
 IEEE TRANS. NEURAL NETW
, 1999
"... Independent component analysis (ICA) is a statistical method for transforming an observed multidimensional random vector into components that are statistically as independent from each other as possible. In this paper, we use a combination of two different approaches for linear ICA: Comon’s informat ..."
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Cited by 885 (34 self)
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Independent component analysis (ICA) is a statistical method for transforming an observed multidimensional random vector into components that are statistically as independent from each other as possible. In this paper, we use a combination of two different approaches for linear ICA: Comon’s
Least angle regression
, 2004
"... The purpose of model selection algorithms such as All Subsets, Forward Selection and Backward Elimination is to choose a linear model on the basis of the same set of data to which the model will be applied. Typically we have available a large collection of possible covariates from which we hope to s ..."
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Cited by 1325 (37 self)
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to select a parsimonious set for the efficient prediction of a response variable. Least Angle Regression (LARS), a new model selection algorithm, is a useful and less greedy version of traditional forward selection methods. Three main properties are derived: (1) A simple modification of the LARS algorithm
A direct approach to false discovery rates
, 2002
"... Summary. Multiplehypothesis testing involves guarding against much more complicated errors than singlehypothesis testing. Whereas we typically control the type I error rate for a singlehypothesis test, a compound error rate is controlled for multiplehypothesis tests. For example, controlling the ..."
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Cited by 773 (14 self)
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the false discovery rate FDR traditionally involves intricate sequential pvalue rejection methods based on the observed data. Whereas a sequential pvalue method fixes the error rate and estimates its corresponding rejection region, we propose the opposite approach—we fix the rejection region
Multipoint quantitativetrait linkage analysis in general pedigrees
 Am. J. Hum. Genet
, 1998
"... Multipoint linkage analysis of quantitativetrait loci (QTLs) has previously been restricted to sibships and small pedigrees. In this article, we show how variancecomponent linkage methods can be used in pedigrees of arbitrary size and complexity, and we develop a general framework for multipoint i ..."
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Cited by 567 (60 self)
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identitybydescent (IBD) probability calculations. We extend the sibpair multipoint mapping approach of Fulker et al. to general relative pairs. This multipoint IBD method uses the proportion of alleles shared identical by descent at genotyped loci to estimate IBD sharing at arbitrary points along a
A new approach to the maximum flow problem
 JOURNAL OF THE ACM
, 1988
"... All previously known efficient maximumflow algorithms work by finding augmenting paths, either one path at a time (as in the original Ford and Fulkerson algorithm) or all shortestlength augmenting paths at once (using the layered network approach of Dinic). An alternative method based on the pre ..."
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Cited by 672 (33 self)
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on the preflow concept of Karzanov is introduced. A preflow is like a flow, except that the total amount flowing into a vertex is allowed to exceed the total amount flowing out. The method maintains a preflow in the original network and pushes local flow excess toward the sink along what are estimated
Results 1  10
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1,500,584