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DETECTION OF HYBRIDS IN COMMERCIALLY PROPAGATED EUCALYPTUS USING 5S RDNA SEQUENCE

by unknown authors , 2002
"... In South Africa, Eucalyptus grandis has been used extensively in commercial plantations. E. grandis, together with two other important South African forestry species (E. saligna and E. urophylla) form part of the Eucalyptus section Transversaria. Identification of these species and their hybrids is ..."
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also included. Sequence analysis showed that the 5S spacer is sufficiently variable for distinguishing E. grandis, E. urophylla and E. saligna from each other. It also revealed that two of the three commercially grown E. grandis in South Africa are hybrids. Despite the utility of this approach

MOLECULAR PHYLOGENY OF COMMON CIBICIDIDS AND RELATED ROTALIIDA (FORAMINIFERA) BASED ON SMALL SUBUNIT RDNA SEQUENCES

by Magali Schweizer, Jan Pawlowski, Tanja Kouwenhoven, Bert, Van Der Zwaan
"... To infer the phylogenetic relationships of cibicidids, we obtained small subunit ribosomal DNA (SSU rDNA) sequences of six common cibicidid morphospecies. In view of our results, the placement of cibicidids in different superfamilies, the distinction between planoconvex Cibicides and biconvex Cibici ..."
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To infer the phylogenetic relationships of cibicidids, we obtained small subunit ribosomal DNA (SSU rDNA) sequences of six common cibicidid morphospecies. In view of our results, the placement of cibicidids in different superfamilies, the distinction between planoconvex Cibicides and biconvex

PHYLOGENETIC RELATIONSHIPS BETWEEN BACILLUS SPECIES AND RELATED GENERA INFERRED FROM 16S RDNA SEQUENCES

by Wei Wang, Mi Sun
"... Neighbor-joining, maximum-parsimony, minimum-evolution, maximum-likelihood and Bayesian trees constructed based on 16S rDNA sequences of 181 type strains of Bacillus species and related taxa manifested nine phylogenetic groups. The phylogenetic analysis showed that Bacillus was not a monophyletic gr ..."
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Neighbor-joining, maximum-parsimony, minimum-evolution, maximum-likelihood and Bayesian trees constructed based on 16S rDNA sequences of 181 type strains of Bacillus species and related taxa manifested nine phylogenetic groups. The phylogenetic analysis showed that Bacillus was not a monophyletic

Characterization of microbial diversity by determining terminal restriction length polymorphisms of genes encoding 16S rDNA.

by Wen-Tso Liu , Terence L Marsh , Hans Cheng , Larry J Forney - Appl. Environ. Microbiol. , 1997
"... A quantitative molecular technique was developed for rapid analysis of microbial community diversity in various environments. The technique employed PCR in which one of the two primers used was fluorescently labeled at the 5 end and was used to amplify a selected region of bacterial genes encoding ..."
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16S rRNA from total community DNA. The PCR product was digested with restriction enzymes, and the fluorescently labeled terminal restriction fragment was precisely measured by using an automated DNA sequencer. Computersimulated analysis of terminal restriction fragment length polymorphisms (T

rDNA ITS sequences

by Bin Lian, Jin-ping Zang, Wei-guo Hou, Sheng Yuan, Donald L. Smith
"... PCR-based sensitive detection of the edible fungus Boletus edulis from ..."
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PCR-based sensitive detection of the edible fungus Boletus edulis from

OF 16S rDNA SEQUENCES

by Dragana Jošić, Slobodan Kuzmanović, Saša Stojanović, Snežana Pavlović, Mira Starović, Jošić D, S. Kuzmanović, S. Stojanović, G. Aleksić, S. Pavlović
"... M. Stavrović (2010): Detection of XIIA phytoplasma group on cultivar Zupljanka in Zupa vineyard region by RFLP analysis of 16S rDNA sequences.- Genetika, Vol 42, No. 1, 145-153. “Bois noir ” (BN) is an important grapevine disease associated with phytoplasmas belonging to ribosomal subgroup 16SrXII-A ..."
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M. Stavrović (2010): Detection of XIIA phytoplasma group on cultivar Zupljanka in Zupa vineyard region by RFLP analysis of 16S rDNA sequences.- Genetika, Vol 42, No. 1, 145-153. “Bois noir ” (BN) is an important grapevine disease associated with phytoplasmas belonging to ribosomal subgroup 16Sr

(18S rDNA) sequences

by Peter H. H. Weekers, Gopal Murugan, Jacques R. Vanfleteren, Denton Belk, Henri J. Dumonta , 2002
"... inferred from nuclear 18S ribosomal DNA ..."
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inferred from nuclear 18S ribosomal DNA

rDNA and partial 28S rDNA sequences

by Arthropoda Using Complete S, Gonzalo Giribet, Salvador Carranza, Marta Riutort, Jaume Bagun A
"... The internal phylogeny of the `myriapod ' class Chilopoda is evaluated for 12 species belonging to the ¢ve extant centipede orders, using 18S rDNA complete gene sequence and 28S rDNA partial gene sequence data. Equally and di¡erentially weighted parsimony, neighbour-joining and maximum-likeliho ..."
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The internal phylogeny of the `myriapod ' class Chilopoda is evaluated for 12 species belonging to the ¢ve extant centipede orders, using 18S rDNA complete gene sequence and 28S rDNA partial gene sequence data. Equally and di¡erentially weighted parsimony, neighbour-joining and maximum

ITS2 rDNA region

by Chatchanit Arif, Camille Daniels, Till Bayer, Eulalia Banguera-hinestroza, Adrian Barbrook, Christopher J Howe, Todd C. Lajeunesse, Christian R
"... via next-generation sequencing-based genotyping of the ..."
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via next-generation sequencing-based genotyping of the

rDNA and rbcL sequence comparisons in the

by Andrey A. Gontcharov, Birger Marin, Michael Melkonian , 2004
"... Are combined analyses better than single gene phylogenies? A case study using SSU ..."
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Are combined analyses better than single gene phylogenies? A case study using SSU
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