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7,184
A code in the protein coding genes
, 1997
"... A statistical analysis with 12 288 autocorrelation functions applied in protein (coding) genes of prokaryotes and eukaryotes identifies three subsets of trinucleotides in their three frames: ..."
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A statistical analysis with 12 288 autocorrelation functions applied in protein (coding) genes of prokaryotes and eukaryotes identifies three subsets of trinucleotides in their three frames:
Chronic lymphocytic leukemia: interplay between noncoding RNAs and protein-coding genes
- Blood
, 2009
"... One of the most unexpected and fascinating discoveries in oncology over the past few years is the interplay between abnormalities in protein-coding genes and noncoding RNAs (ncRNAs) that is causally involved in cancer initiation, progression, and dissemination. MicroRNAs ..."
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Cited by 7 (0 self)
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One of the most unexpected and fascinating discoveries in oncology over the past few years is the interplay between abnormalities in protein-coding genes and noncoding RNAs (ncRNAs) that is causally involved in cancer initiation, progression, and dissemination. MicroRNAs
Letter Recent de novo origin of human protein-coding genes
"... The origin of new genes is extremely important to evolutionary innovation. Most new genes arise from existing genes through duplication or recombination. The origin of new genes from noncoding DNA is extremely rare, and very few eukaryotic examples are known. We present evidence for the de novo orig ..."
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origin of at least three human protein-coding genes since the divergence with chimp. Each of these genes has no protein-coding homologs in any other genome, but is supported by evidence from expression and, importantly, proteomics data. The absence of these genes in chimp andmacaque cannot be explained
Review Identifying protein-coding genes in genomic sequences
, 2009
"... electronic version of this article is the complete one and can be ..."
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Cited by 10 (2 self)
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electronic version of this article is the complete one and can be
Recognition of Protein-coding Genes Based on Z-curve Algorithms
"... Abstract: Recognition of protein-coding genes, a classical bioinformatics issue, is an absolutely needed step for annotat-ing newly sequenced genomes. The Z-curve algorithm, as one of the most effective methods on this issue, has been suc-cessfully applied in annotating or re-annotating many genomes ..."
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Abstract: Recognition of protein-coding genes, a classical bioinformatics issue, is an absolutely needed step for annotat-ing newly sequenced genomes. The Z-curve algorithm, as one of the most effective methods on this issue, has been suc-cessfully applied in annotating or re-annotating many
Patterns of Positive Selection and Neutral Evolution in the Protein-Coding Genes of Tetraodon and Takifugu
, 2011
"... Recent genome-wide analyses have revealed patterns of positive selection acting on protein-coding genes in humans and mammals. To assess whether the conclusions drawn from these analyses are valid for other vertebrates and to identify mammalian specificities, I have investigated the selective pressu ..."
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Recent genome-wide analyses have revealed patterns of positive selection acting on protein-coding genes in humans and mammals. To assess whether the conclusions drawn from these analyses are valid for other vertebrates and to identify mammalian specificities, I have investigated the selective
Theoretical Prediction and Experimental Verification of Protein-Coding Genes in Plant Pathogen Genome
, 2012
"... Agrobacterium tumefaciens strain C58 is a Gram-negative soil bacterium capable of inducing tumors (crown galls) on many dicotyledonous plants. The genome of A. tumefaciens strain C58 was re-annotated based on the Z-curve method. First, all the ‘hypothetical genes ’ were re-identified, and 29 origina ..."
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prediction, 19 potential protein-coding genes were predicted to be new protein-coding genes. Fifteen (79%) of these genes were verified with RT-PCR experiments. The RT-PCR experimental results confirmed the reliability of our theoretical prediction, indicating that false-positive prediction and missing genes
Distribution and nomenclature of protein-coding genes in 12 sequenced chloroplast genomes
- Plant Mol. Biol. Report
, 1998
"... A number of chloroplast genomes have been sequenced and many more are in the pipeline. We have investigated the information contained in completely sequenced chloroplast genomes for the purpose of studying plant evolution and the process of chloroplast genome migration to the nucleus (Martin et al., ..."
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Cited by 5 (0 self)
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sight. We have tabulated all of the protein-coding genes in sequenced chloroplast genomes that we could identify using BLAST searches which are (i) encoded in at least two sequenced chloroplast genomes or (ii) encoded in at least one sequenced chloroplast genome and in the genome of Synechocystis sp
Discovery of Protein Coding Genes through Chromosome-to-Chromosome Sequence Comparison
"... Finding genes, especially those encoding proteins, is the first and one of the most important steps toward understanding the information encoded in genomes. In spite of many efforts in the last few decades, computational identification of protein-coding genes in eukaryotic genomes is still in a deve ..."
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Finding genes, especially those encoding proteins, is the first and one of the most important steps toward understanding the information encoded in genomes. In spite of many efforts in the last few decades, computational identification of protein-coding genes in eukaryotic genomes is still in a
The Hymenopteran Tree of Life: Evidence from Protein- Coding Genes and Objectively Aligned Ribosomal Data
"... The hymenopteran tree of life: evidence from protein-coding genes and objectively aligned ribosomal data ..."
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The hymenopteran tree of life: evidence from protein-coding genes and objectively aligned ribosomal data
Results 1 - 10
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