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Table 1: Close patterns in a yeast protein interaction network.
2005
"... In PAGE 7: ...omplete bipartite subgraphs. Our machine is a PC with a CPU clock rate 3.2GHz and 2GB of memory. The results are reported in Table1 , where the second column shows the total number of frequent close patterns whose support level is at least the threshold number in the column one. The third column of this table shows the number of close patterns whose cardinality and support are both at least the support threshold; all such closed patterns are termed qualified closed patterns.... In PAGE 7: ... The many-few property says that: a protein that interacts with lots of other proteins tends not to interact with another protein that interacts with lots of other proteins (Maslov amp; Sneppen, 2002). This is most clearly seen in Table1 at the higher support thresholds. For example, at the support threshold 11, there are 12402 protein groups that have full interactions with at least 11 proteins.... ..."
Cited by 1
Table 2. Percent of high confidence chaperone interactions in two yeast protein-protein interaction networks
"... In PAGE 2: ... Not surprisingly, chaperones form low affinity, dynamic temporary interactions (weak links) in cellular networks (Table 1; Csermely, 2004; Tsigelny and Nigam, 2004). Chaperones have a large number of neighbors acting like hubs in the yeast protein-protein interaction network ( Table2 ). The large proportion of hubs in the close vicinity of chaperones gives a central position to these proteins in the protein-protein network, which may help the chaperone-mediated cross talk between pathways.... ..."
Table 2. Percent of high confidence chaperone interactions in two yeast protein-protein interaction networks
"... In PAGE 2: ... Not surprisingly, chaperones form low affinity, dynamic temporary interactions (weak links) in cellular networks (Table 1; Csermely, 2004; Tsigelny and Nigam, 2004). Chaperones have a large number of neighbors acting like hubs in the yeast protein-protein interaction network ( Table2 ). The large proportion of hubs in the close vicinity of chaperones gives a central position to these proteins in the protein-protein network, which may help the chaperone-mediated cross talk between pathways.... ..."
Table 1 The numbers of proteins and interactions to obtain protein-protein interaction networks and residual networks with network analyzing features in 7 organisms in DIP.
"... In PAGE 9: ... The residual network has 1078 nodes and 2778 edges. All 7 protein-protein interaction networks we use in this research are presented in Table1 . The rst rows for each organism are about the original networks and the second rows have the information for their residual networks.... ..."
Table 1. Chaperones connect hubs in the yeast protein-protein interaction network Chaperone
"... In PAGE 2: ... Chaperones in cellular networks Molecular chaperones bind and release a large number of damaged proteins, which requires a large promiscuity in their interactions. Not surprisingly, chaperones form low affinity, dynamic temporary interactions (weak links) in cellular networks ( Table1 ; Csermely, 2004; Tsigelny and Nigam, 2004). Chaperones have a large number of neighbors acting like hubs in the yeast protein-protein interaction network (Table 2).... ..."
Table 1. Chaperones connect hubs in the yeast protein-protein interaction network Chaperone
"... In PAGE 2: ... Chaperones in cellular networks Molecular chaperones bind and release a large number of damaged proteins, which requires a large promiscuity in their interactions. Not surprisingly, chaperones form low affinity, dynamic temporary interactions (weak links) in cellular networks ( Table1 ; Csermely, 2004; Tsigelny and Nigam, 2004). Chaperones have a large number of neighbors acting like hubs in the yeast protein-protein interaction network (Table 2).... ..."
Table 3. Number of chaperone-connected modules in protein-protein interaction networks Chaperone class Annotated yeast
Table 3. Number of chaperone-connected modules in protein-protein interaction networks Chaperone class Annotated yeast
Table 2. Percent of high confi dence chaperone interactions in two yeast protein-protein interaction networks. Chaperone class Annotated yeast
Table 2: Contingency table of occurrence distribution for fitness versus protein connectivity in protein-protein interaction network. The number in the parenthesis is the expected value.
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