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561,365
Measuring ISP Topologies with Rocketfuel
 In Proc. ACM SIGCOMM
, 2002
"... To date, realistic ISP topologies have not been accessible to the research community, leaving work that depends on topology on an uncertain footing. In this paper, we present new Internet mapping techniques that have enabled us to directly measure routerlevel ISP topologies. Our techniques reduce t ..."
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Cited by 838 (30 self)
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To date, realistic ISP topologies have not been accessible to the research community, leaving work that depends on topology on an uncertain footing. In this paper, we present new Internet mapping techniques that have enabled us to directly measure routerlevel ISP topologies. Our techniques reduce
Evolving Neural Networks through Augmenting Topologies
 Evolutionary Computation
"... An important question in neuroevolution is how to gain an advantage from evolving neural network topologies along with weights. We present a method, NeuroEvolution of Augmenting Topologies (NEAT), which outperforms the best fixedtopology method on a challenging benchmark reinforcement learning task ..."
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Cited by 524 (113 self)
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task. We claim that the increased efficiency is due to (1) employing a principled method of crossover of different topologies, (2) protecting structural innovation using speciation, and (3) incrementally growing from minimal structure. We test this claim through a series of ablation studies
Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes
 J. MOL. BIOL
, 2001
"... ..."
BRITE: An Approach to Universal Topology Generation
, 2001
"... Effective engineering of the Internet is predicated upon a detailed understanding of issues such as the largescale structure of its underlying physical topology, the manner in which it evolves over time, and the way in which its constituent components contribute to its overall function. Unfortunate ..."
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Cited by 437 (12 self)
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Effective engineering of the Internet is predicated upon a detailed understanding of issues such as the largescale structure of its underlying physical topology, the manner in which it evolves over time, and the way in which its constituent components contribute to its overall function
Improved prediction of signal peptides  SignalP 3.0
 J. MOL. BIOL.
, 2004
"... We describe improvements of the currently most popular method for prediction of classically secreted proteins, SignalP. SignalP consists of two different predictors based on neural network and hidden Markov model algorithms, where both components have been updated. Motivated by the idea that the cle ..."
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Cited by 655 (7 self)
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We describe improvements of the currently most popular method for prediction of classically secreted proteins, SignalP. SignalP consists of two different predictors based on neural network and hidden Markov model algorithms, where both components have been updated. Motivated by the idea
Statistical mechanics of complex networks
 Rev. Mod. Phys
"... Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical links. While traditionally these systems were modeled as ra ..."
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Cited by 2083 (10 self)
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as random graphs, it is increasingly recognized that the topology and evolution of real
ChernSimons Gauge Theory as a String Theory
, 2003
"... Certain two dimensional topological field theories can be interpreted as string theory backgrounds in which the usual decoupling of ghosts and matter does not hold. Like ordinary string models, these can sometimes be given spacetime interpretations. For instance, threedimensional ChernSimons gaug ..."
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Cited by 551 (14 self)
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Certain two dimensional topological field theories can be interpreted as string theory backgrounds in which the usual decoupling of ghosts and matter does not hold. Like ordinary string models, these can sometimes be given spacetime interpretations. For instance, threedimensional Chern
KodairaSpencer theory of gravity and exact results for quantum string amplitudes
 Commun. Math. Phys
, 1994
"... We develop techniques to compute higher loop string amplitudes for twisted N = 2 theories with ĉ = 3 (i.e. the critical case). An important ingredient is the discovery of an anomaly at every genus in decoupling of BRST trivial states, captured to all orders by a master anomaly equation. In a particu ..."
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Cited by 545 (60 self)
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We develop techniques to compute higher loop string amplitudes for twisted N = 2 theories with ĉ = 3 (i.e. the critical case). An important ingredient is the discovery of an anomaly at every genus in decoupling of BRST trivial states, captured to all orders by a master anomaly equation. In a
Primitives for the manipulation of general subdivisions and the computations of Voronoi diagrams
 ACM Tmns. Graph
, 1985
"... The following problem is discussed: Given n points in the plane (the sites) and an arbitrary query point 4, find the site that is closest to q. This problem can be solved by constructing the Voronoi diagram of the given sites and then locating the query point in one of its regions. Two algorithms ar ..."
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Cited by 543 (11 self)
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to the separation of the geometrical and topological aspects of the problem and to the use of two simple but powerful primitives, a geometric predicate and an operator for manipulating the topology of the diagram. The topology is represented by a new data structure for generalized diagrams, that is, embeddings
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
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Cited by 2109 (30 self)
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. The core of this method is a simple hillclimbing algorithm that adjusts tree topology and branch lengths simultaneously. This algorithm starts from an initial tree built by a fast distancebased method and modifies this tree to improve its likelihood at each iteration. Due to this simultaneous adjustment
Results 1  10
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561,365