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Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of Their Cleavage Sites

by Henrik Nielsen, Jacob Engelbrecht, Søren Brunak, Gunnar von Heijne , 1997
"... We have developed a new method for identification of signal peptides and their cleavage sites based on neural networks trained on separate sets of prokaryotic and eukaryotic sequences. The method performs significantly better than previous prediction schemes, and can easily be applied on genome-wide ..."
Abstract - Cited by 787 (17 self) - Add to MetaCart
We have developed a new method for identification of signal peptides and their cleavage sites based on neural networks trained on separate sets of prokaryotic and eukaryotic sequences. The method performs significantly better than previous prediction schemes, and can easily be applied on genome

The CONSORT statement: revised recommendations for improving the quality of reports of parallel-group randomized trials,”

by MSc; David Moher , PhD, MBA; Kenneth F Schulz , Douglas G Altman - Journal of the American Medical Association, , 1987
"... To comprehend the results of a randomized, controlled trial (RCT), readers must understand its design, conduct, analysis, and interpretation. That goal can be achieved only through complete transparency from authors. Despite several decades of educational efforts, the reporting of RCTs needs improv ..."
Abstract - Cited by 787 (15 self) - Add to MetaCart
improvement. Investigators and editors developed the original CONSORT (Consolidated Standards of Reporting Trials) statement to help authors improve reporting by using a checklist and flow diagram. The revised CONSORT statement presented in this paper incorporates new evidence and addresses some criticisms

EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis

by Arnaud Delorme, Scott Makeig - J. Neurosci. Methods
"... Abstract: We have developed a toolbox and graphic user interface, EEGLAB, running under the cross-platform MATLAB environment (The Mathworks, Inc.) for processing collections of single-trial and/or averaged EEG data of any number of channels. Available functions include EEG data, channel and event i ..."
Abstract - Cited by 886 (45 self) - Add to MetaCart
Abstract: We have developed a toolbox and graphic user interface, EEGLAB, running under the cross-platform MATLAB environment (The Mathworks, Inc.) for processing collections of single-trial and/or averaged EEG data of any number of channels. Available functions include EEG data, channel and event

Improved prediction of signal peptides -- SignalP 3.0

by Jannick Dyrløv Bendtsen, Henrik Nielsen, Gunnar von Heijne, Søren Brunak - J. MOL. BIOL. , 2004
"... We describe improvements of the currently most popular method for prediction of classically secreted proteins, SignalP. SignalP consists of two different predictors based on neural network and hidden Markov model algorithms, where both components have been updated. Motivated by the idea that the cle ..."
Abstract - Cited by 654 (7 self) - Add to MetaCart
that the cleavage site position and the amino acid composition of the signal peptide are correlated, new features have been included as input to the neural network. This addition, combined with a thorough error-correction of a new data set, have improved the performance of the predictor significantly over Signal

Primitives for the manipulation of general subdivisions and the computations of Voronoi diagrams

by Leonidas Guibas, Jorge Stolfi - ACM Tmns. Graph , 1985
"... The following problem is discussed: Given n points in the plane (the sites) and an arbitrary query point 4, find the site that is closest to q. This problem can be solved by constructing the Voronoi diagram of the given sites and then locating the query point in one of its regions. Two algorithms ar ..."
Abstract - Cited by 534 (11 self) - Add to MetaCart
are given, one that constructs the Voronoi diagram in O(n log n) time, and another that inserts a new site in O(n) time. Both are based on the use of the Voronoi dual, or Delaunay triangulation, and are simple enough to be of practical value. The simplicity of both algorithms can be attributed

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

by Koichiro Tamura , Masatoshi Nei - Mol Biol Evol , 1993
"... Examining the pattern of nucleotide substitution for the control region of mitochondrial DNA ( mtDNA ) in humans and chimpanzees, we developed a new mathematical method for estimating the number of transitional and transversional substitutions per site, as well as the total number of nucleotide sub ..."
Abstract - Cited by 925 (4 self) - Add to MetaCart
Examining the pattern of nucleotide substitution for the control region of mitochondrial DNA ( mtDNA ) in humans and chimpanzees, we developed a new mathematical method for estimating the number of transitional and transversional substitutions per site, as well as the total number of nucleotide

Attribute-based encryption for fine-grained access control of encrypted data

by Vipul Goyal, Amit Sahai, Omkant Pandey, Brent Waters - In Proc. of ACMCCS’06 , 2006
"... As more sensitive data is shared and stored by third-party sites on the Internet, there will be a need to encrypt data stored at these sites. One drawback of encrypting data, is that it can be selectively shared only at a coarse-grained level (i.e., giving another party your private key). We develop ..."
Abstract - Cited by 522 (23 self) - Add to MetaCart
As more sensitive data is shared and stored by third-party sites on the Internet, there will be a need to encrypt data stored at these sites. One drawback of encrypting data, is that it can be selectively shared only at a coarse-grained level (i.e., giving another party your private key). We

Measurement and Analysis of Online Social Networks

by Alan Mislove, Massimiliano Marcon, Krishna P. Gummadi, Peter Druschel, Bobby Bhattacharjee - In Proceedings of the 5th ACM/USENIX Internet Measurement Conference (IMC’07 , 2007
"... Online social networking sites like Orkut, YouTube, and Flickr are among the most popular sites on the Internet. Users of these sites form a social network, which provides a powerful means of sharing, organizing, and finding content and contacts. The popularity of these sites provides an opportunity ..."
Abstract - Cited by 698 (14 self) - Add to MetaCart
Online social networking sites like Orkut, YouTube, and Flickr are among the most popular sites on the Internet. Users of these sites form a social network, which provides a powerful means of sharing, organizing, and finding content and contacts. The popularity of these sites provides

Opinion Mining and Sentiment Analysis

by Bo Pang, Lillian Lee , 2008
"... An important part of our information-gathering behavior has always been to find out what other people think. With the growing availability and popularity of opinion-rich resources such as online review sites and personal blogs, new opportunities and challenges arise as people now can, and do, active ..."
Abstract - Cited by 749 (3 self) - Add to MetaCart
An important part of our information-gathering behavior has always been to find out what other people think. With the growing availability and popularity of opinion-rich resources such as online review sites and personal blogs, new opportunities and challenges arise as people now can, and do

A Metrics Suite for Object Oriented Design

by Shyam R. Chidamber , Chris F. Kemerer , 1994
"... Given the central role that software development plays in the delivery and application of information technology, managers are increasingly focusing on process improvement in the software development area. This demand has spurred the provision of a number of new and/or improved approaches to softwa ..."
Abstract - Cited by 1108 (3 self) - Add to MetaCart
Given the central role that software development plays in the delivery and application of information technology, managers are increasingly focusing on process improvement in the software development area. This demand has spurred the provision of a number of new and/or improved approaches
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