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5,624,037
Exploration, normalization, and summaries of high density oligonucleotide array probe level data.
 Biostatistics,
, 2003
"... SUMMARY In this paper we report exploratory analyses of highdensity oligonucleotide array data from the Affymetrix GeneChip R system with the objective of improving upon currently used measures of gene expression. Our analyses make use of three data sets: a small experimental study consisting of f ..."
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Cited by 850 (33 self)
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familiar features of the perfect match and mismatch probe (P M and M M) values of these data, and examine the variancemean relationship with probelevel data from probes believed to be defective, and so delivering noise only. We explain why we need to normalize the arrays to one another using probe level
Mtree: An Efficient Access Method for Similarity Search in Metric Spaces
, 1997
"... A new access meth d, called Mtree, is proposed to organize and search large data sets from a generic "metric space", i.e. whE4 object proximity is only defined by a distance function satisfyingth positivity, symmetry, and triangle inequality postulates. We detail algorith[ for insertion o ..."
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Cited by 662 (38 self)
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A new access meth d, called Mtree, is proposed to organize and search large data sets from a generic "metric space", i.e. whE4 object proximity is only defined by a distance function satisfyingth positivity, symmetry, and triangle inequality postulates. We detail algorith[ for insertion
Theoretical improvements in algorithmic efficiency for network flow problems

, 1972
"... This paper presents new algorithms for the maximum flow problem, the Hitchcock transportation problem, and the general minimumcost flow problem. Upper bounds on ... the numbers of steps in these algorithms are derived, and are shown to compale favorably with upper bounds on the numbers of steps req ..."
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Cited by 560 (0 self)
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in the flow value then, provided the capacities are integral, a maximum flow will be determined within at most 1 + logM/(M1) if(t, S) augmentations, wheref*(t, s) is the value of the maximum flow and M is the maximum number of arcs across a cut. Next a new algorithm is given for the minimumcost flow
Monotone Complexity
, 1990
"... We give a general complexity classification scheme for monotone computation, including monotone spacebounded and Turing machine models not previously considered. We propose monotone complexity classes including mAC i , mNC i , mLOGCFL, mBWBP , mL, mNL, mP , mBPP and mNP . We define a simple ..."
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Cited by 2821 (11 self)
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We give a general complexity classification scheme for monotone computation, including monotone spacebounded and Turing machine models not previously considered. We propose monotone complexity classes including mAC i , mNC i , mLOGCFL, mBWBP , mL, mNL, mP , mBPP and mNP . We define a
AN n 5/2 ALGORITHM FOR MAXIMUM MATCHINGS IN BIPARTITE GRAPHS
, 1973
"... The present paper shows how to construct a maximum matching in a bipartite graph with n vertices and m edges in a number of computation steps proportional to (m + n)x/. ..."
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Cited by 699 (1 self)
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The present paper shows how to construct a maximum matching in a bipartite graph with n vertices and m edges in a number of computation steps proportional to (m + n)x/.
Bayesian Model Selection in Social Research (with Discussion by Andrew Gelman & Donald B. Rubin, and Robert M. Hauser, and a Rejoinder)
 SOCIOLOGICAL METHODOLOGY 1995, EDITED BY PETER V. MARSDEN, CAMBRIDGE,; MASS.: BLACKWELLS.
, 1995
"... It is argued that Pvalues and the tests based upon them give unsatisfactory results, especially in large samples. It is shown that, in regression, when there are many candidate independent variables, standard variable selection procedures can give very misleading results. Also, by selecting a singl ..."
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Cited by 583 (21 self)
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It is argued that Pvalues and the tests based upon them give unsatisfactory results, especially in large samples. It is shown that, in regression, when there are many candidate independent variables, standard variable selection procedures can give very misleading results. Also, by selecting a single model, they ignore model uncertainty and so underestimate the uncertainty about quantities of interest. The Bayesian approach to hypothesis testing, model selection and accounting for model uncertainty is presented. Implementing this is straightforward using the simple and accurate BIC approximation, and can be done using the output from standard software. Specific results are presented for most of the types of model commonly used in sociology. It is shown that this approach overcomes the difficulties with P values and standard model selection procedures based on them. It also allows easy comparison of nonnested models, and permits the quantification of the evidence for a null hypothesis...
Surface reconstruction from unorganized points
 COMPUTER GRAPHICS (SIGGRAPH ’92 PROCEEDINGS)
, 1992
"... We describe and demonstrate an algorithm that takes as input an unorganized set of points fx1�:::�xng IR 3 on or near an unknown manifold M, and produces as output a simplicial surface that approximates M. Neither the topology, the presence of boundaries, nor the geometry of M are assumed to be know ..."
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Cited by 818 (8 self)
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We describe and demonstrate an algorithm that takes as input an unorganized set of points fx1�:::�xng IR 3 on or near an unknown manifold M, and produces as output a simplicial surface that approximates M. Neither the topology, the presence of boundaries, nor the geometry of M are assumed
Signal recovery from random measurements via Orthogonal Matching Pursuit
 IEEE TRANS. INFORM. THEORY
, 2007
"... This technical report demonstrates theoretically and empirically that a greedy algorithm called Orthogonal Matching Pursuit (OMP) can reliably recover a signal with m nonzero entries in dimension d given O(m ln d) random linear measurements of that signal. This is a massive improvement over previous ..."
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Cited by 802 (9 self)
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This technical report demonstrates theoretically and empirically that a greedy algorithm called Orthogonal Matching Pursuit (OMP) can reliably recover a signal with m nonzero entries in dimension d given O(m ln d) random linear measurements of that signal. This is a massive improvement over
Efficient dispersal of information for security, load balancing, and fault tolerance
 Journal of the ACM
, 1989
"... Abstract. An Information Dispersal Algorithm (IDA) is developed that breaks a file F of length L = ( F ( into n pieces F,, 1 5 i 5 n, each of length ( F, 1 = L/m, so that every m pieces suffice for reconstructing F. Dispersal and reconstruction are computationally efficient. The sum of the lengths ..."
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Cited by 562 (1 self)
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Abstract. An Information Dispersal Algorithm (IDA) is developed that breaks a file F of length L = ( F ( into n pieces F,, 1 5 i 5 n, each of length ( F, 1 = L/m, so that every m pieces suffice for reconstructing F. Dispersal and reconstruction are computationally efficient. The sum of the lengths
Fibonacci Heaps and Their Uses in Improved Network optimization algorithms
, 1987
"... In this paper we develop a new data structure for implementing heaps (priority queues). Our structure, Fibonacci heaps (abbreviated Fheaps), extends the binomial queues proposed by Vuillemin and studied further by Brown. Fheaps support arbitrary deletion from an nitem heap in qlogn) amortized tim ..."
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Cited by 738 (18 self)
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time and all other standard heap operations in o ( 1) amortized time. Using Fheaps we are able to obtain improved running times for several network optimization algorithms. In particular, we obtain the following worstcase bounds, where n is the number of vertices and m the number of edges
Results 1  10
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5,624,037