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1Gene Co-regulation vs. Co-expression
"... One important goal of analyzing gene expression data is to discover co-regulated genes. For a relatively long time, it has been assumed that similar patterns in gene expression pro-files usually suggest relationships between the genes. According to [3], genes targeted by the same transcription facto ..."
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One important goal of analyzing gene expression data is to discover co-regulated genes. For a relatively long time, it has been assumed that similar patterns in gene expression pro-files usually suggest relationships between the genes. According to [3], genes targeted by the same transcription
Gene co-regulation by Fezf2 selects neurotransmitter identity and
"... connectivity of corticospinal neurons ..."
Database of Gene Co-Regulation (dGCR): A Web Tool for Analysing Patterns of Gene Co-regulation across Publicly Available Expression Data
"... © Ivyspring International Publisher. This is an open-access article distributed under the terms of the Creative Commons License ..."
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© Ivyspring International Publisher. This is an open-access article distributed under the terms of the Creative Commons License
Conservation of Gene Co-Regulation between Two Prokaryotes: Bacillus subtilis and Escherichia coli
- GENOME INFORMATICS 16(1): 116–124 (2005)
, 2005
"... We measured conservation of gene co-regulation between two distantly related prokaryotes, B. subtilis and E. coli. The co-regulation between genes was extracted from knowledge of regulation of genes stored in databases. For B. subtilis operons, we obtained the data set from ODB which we have develop ..."
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We measured conservation of gene co-regulation between two distantly related prokaryotes, B. subtilis and E. coli. The co-regulation between genes was extracted from knowledge of regulation of genes stored in databases. For B. subtilis operons, we obtained the data set from ODB which we have
Genome-Wide Integration on Transcription Factors, Histone Acetylation and Gene Expression Reveals Genes Co-Regulated by Histone Modification Patterns
"... N-terminal tails of H2A, H2B, H3 and H4 histone families are subjected to posttranslational modifications that take part in transcriptional regulation mechanisms, such as transcription factor binding and gene expression. Regulation mechanisms under control of histone modification are important but r ..."
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N-terminal tails of H2A, H2B, H3 and H4 histone families are subjected to posttranslational modifications that take part in transcriptional regulation mechanisms, such as transcription factor binding and gene expression. Regulation mechanisms under control of histone modification are important
unknown title
, 2004
"... Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes ..."
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Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes
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"... doi:10.1093/bioinformatics/bth252 Combining pattern discovery and discriminant analysis to predict gene co-regulation ..."
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doi:10.1093/bioinformatics/bth252 Combining pattern discovery and discriminant analysis to predict gene co-regulation
Tested CRMs (spdoCRM x)
"... Genome-wide identification of cis-regulatory motifs and modules underlying gene co-regulation using statistics and phylogeny ..."
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Genome-wide identification of cis-regulatory motifs and modules underlying gene co-regulation using statistics and phylogeny
1 Gene Specific Co-regulation Discovery from Gene Microarray Data
"... The problem of gene specific co-regulation discovery is to identify, for a particular gene of interest, called target gene, its strongly co-regulated genes and the condition subsets where such strong gene co-regulations are observed. In this paper, we propose an efficient method for finding gene-spe ..."
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The problem of gene specific co-regulation discovery is to identify, for a particular gene of interest, called target gene, its strongly co-regulated genes and the condition subsets where such strong gene co-regulations are observed. In this paper, we propose an efficient method for finding gene
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