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903
Lineage retrieval for scientific data processing: a survey
- ACM Computing Surveys
, 2005
"... Scientific research relies as much on the dissemination and exchange of data sets as on the publication of conclusions. Accurately tracking the lineage (origin and subsequent processing history) of scientific data sets is thus imperative for the complete documentation of scientific work. Researchers ..."
Abstract
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Cited by 172 (2 self)
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Scientific research relies as much on the dissemination and exchange of data sets as on the publication of conclusions. Accurately tracking the lineage (origin and subsequent processing history) of scientific data sets is thus imperative for the complete documentation of scientific work
Behavioral theories and the neurophysiology of reward,
- Annu. Rev. Psychol.
, 2006
"... ■ Abstract The functions of rewards are based primarily on their effects on behavior and are less directly governed by the physics and chemistry of input events as in sensory systems. Therefore, the investigation of neural mechanisms underlying reward functions requires behavioral theories that can ..."
Abstract
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Cited by 187 (0 self)
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that can conceptualize the different effects of rewards on behavior. The scientific investigation of behavioral processes by animal learning theory and economic utility theory has produced a theoretical framework that can help to elucidate the neural correlates for reward functions in learning, goal
Semantic Description, Publication and Discovery of Workflows in myGrid
, 2004
"... The bioinformatics scientific process relies on in silico experiments, which are experiments executed in full in a computational environment. Scientists wish to encode the designs of these experiments as workflows because they provide minimal, declarative descriptions of the designs, overcoming many ..."
Abstract
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Cited by 4 (0 self)
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The bioinformatics scientific process relies on in silico experiments, which are experiments executed in full in a computational environment. Scientists wish to encode the designs of these experiments as workflows because they provide minimal, declarative descriptions of the designs, overcoming
Traceability Mechanisms for Bioinformatics Scientific Workflows
"... Traceability and Provenance are often used inter-changeably in eScience, being associated with the need scientists have to document their experiments, and so al-low experiments to be checked and reproduced by oth-ers. These terms have, however, different meanings: provenance is more often associated ..."
Abstract
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Cited by 1 (1 self)
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associated with data origins, whereas traceability concerns the interlinking and exe-cution of processes. This paper proposes a set of mech-anisms to deal with this last aspect, the solution is based on database research combined with scientific work-flows, plus domain-specific knowledge stored in ontol
Bioinformatics Ontology
"... Motivation: Crystallographers were motivated 10 years ago to develop a simple and consistent data representation for the exchange and archiving of data associated with the crystallographic experiment and the final structure. As this process evolved (and the data grew at near exponential rates) came ..."
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Motivation: Crystallographers were motivated 10 years ago to develop a simple and consistent data representation for the exchange and archiving of data associated with the crystallographic experiment and the final structure. As this process evolved (and the data grew at near exponential rates) came
relying on semantic similarity of weighted Gene Ontology terms
"... Background: Predicting protein function has become increasingly demanding in the era of next generation sequencing technology. The task to assign a curator-reviewed function to every single sequence is impracticable. Bioinformatics tools, easy to use and able to provide automatic and reliable annota ..."
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Background: Predicting protein function has become increasingly demanding in the era of next generation sequencing technology. The task to assign a curator-reviewed function to every single sequence is impracticable. Bioinformatics tools, easy to use and able to provide automatic and reliable
Fuzzy logic in medicine and bioinformatics,”
- Journal of Biomedicine and Biotechnology,
, 2006
"... The purpose of this paper is to present a general view of the current applications of fuzzy logic in medicine and bioinformatics. We particularly review the medical literature using fuzzy logic. We then recall the geometrical interpretation of fuzzy sets as points in a fuzzy hypercube and present t ..."
Abstract
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Cited by 15 (2 self)
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of biological data. This data can consist of the information stored in the genetic code, and also experimental results (and hence imprecision) from various sources, patient statistics, and scientific literature. Bioinformatics combines computer science, biology, physical and chemical principles, and tools
TECHNICALLY SUPPORTED BIOINFORMATICAL EDUCATION
"... Summary: Bioinformatics is a new scientific discipline, connecting together technology and biology. Large amounts of data coming from organism’s micro-level can’t be processed without computer’s support. Nowadays many bioinformatics tools are internet-available. Using these resources for practical i ..."
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Summary: Bioinformatics is a new scientific discipline, connecting together technology and biology. Large amounts of data coming from organism’s micro-level can’t be processed without computer’s support. Nowadays many bioinformatics tools are internet-available. Using these resources for practical
BIOINFORMATICS my Grid: Personalised Bioinformatics on the Information Grid
"... Motivation: The my Grid project aims to exploit Grid technology, with an emphasis on the Information Grid, & provide middleware layers that make it appropriate for the needs of bioinformatics. my Grid is building high level services for data & application integration such as resource discove ..."
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discovery, workflow enactment & distributed query processing. Additional services are provided to support the scientific method & best practice found at the bench but often neglected at the workstation, notably provenance management, change notification & personalisation. Results: We give
Applied Bioinformatics Group
"... Abstract—The Konstanz Information Miner is a user-friendly graphical workflow designer with a broad user base in industry and academia. Its broad range of embedded tools and its powerful data mining and visualization tools render it ideal for scientific workflows. It is thus used more and more in a ..."
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of workflows between the two platforms. This enables a convenient development, debugging, and maintenance of scientific workflows on the desktop. These workflows can then be deployed on a cloud or grid, thus permitting large-scale computation. To achieve our goals, we relied on a Common Tool Description XML
Results 1 - 10
of
903