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New results in linear filtering and prediction theory

by R. E. Kalman, R. S. Bucy - TRANS. ASME, SER. D, J. BASIC ENG , 1961
"... A nonlinear differential equation of the Riccati type is derived for the covariance matrix of the optimal filtering error. The solution of this "variance equation " completely specifies the optimal filter for either finite or infinite smoothing intervals and stationary or nonstationary sta ..."
Abstract - Cited by 607 (0 self) - Add to MetaCart
statistics. The variance equation is closely related to the Hamiltonian (canonical) differential equations of the calculus of variations. Analytic solutions are available in some cases. The significance of the variance equation is illustrated by examples which duplicate, simplify, or extend earlier results

Application of Phylogenetic Networks in Evolutionary Studies

by Daniel H. Huson, David Bryant - SUBMITTED TO MBE 2005 , 2005
"... The evolutionary history of a set of taxa is usually represented by a phylogenetic tree, and this model has greatly facilitated the discussion and testing of hypotheses. However, it is well known that more complex evolutionary scenarios are poorly described by such models. Further, even when evoluti ..."
Abstract - Cited by 887 (15 self) - Add to MetaCart
reticulate events such as hybridization, horizontal gene transfer, recombination, or gene duplication and-loss are believed to be involved, and, even in the absence of such events, phylogenetic networks have a useful role to play. This paper reviews the terminology used for phylogenetic networks and covers

A Case for End System Multicast

by Yang-hua Chu, Sanjay G. Rao, Srinivasan Seshan, Hui Zhang - in Proceedings of ACM Sigmetrics , 2000
"... Abstract — The conventional wisdom has been that IP is the natural protocol layer for implementing multicast related functionality. However, more than a decade after its initial proposal, IP Multicast is still plagued with concerns pertaining to scalability, network management, deployment and suppor ..."
Abstract - Cited by 1290 (24 self) - Add to MetaCart
of multicast support from routers to end systems has the potential to address most problems associated with IP Multicast. However, the key concern is the performance penalty associated with such a model. In particular, End System Multicast introduces duplicate packets on physical links and incurs larger end

Adaptive Duplicate Detection Using Learnable String Similarity Measures

by Mikhail Bilenko, Raymond J. Mooney - In Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD-2003 , 2003
"... The problem of identifying approximately duplicate records in databases is an essential step for data cleaning and data integration processes. Most existing approaches have relied on generic or manually tuned distance metrics for estimating the similarity of potential duplicates. In this paper, we p ..."
Abstract - Cited by 344 (14 self) - Add to MetaCart
present a framework for improving duplicate detection using trainable measures of textual similarity. We propose to employ learnable text distance functions for each database field, and show that such measures are capable of adapting to the specific notion of similarity that is appropriate for the field

The probability of duplicate gene preservation by subfunctionalization.

by Michael Lynch , Allan Force - Genetics , 2000
"... ABSTRACT It has often been argued that gene-duplication events are most commonly followed by a mutational event that silences one member of the pair, while on rare occasions both members of the pair are preserved as one acquires a mutation with a beneficial function and the other retains the origin ..."
Abstract - Cited by 261 (2 self) - Add to MetaCart
ABSTRACT It has often been argued that gene-duplication events are most commonly followed by a mutational event that silences one member of the pair, while on rare occasions both members of the pair are preserved as one acquires a mutation with a beneficial function and the other retains

The diploid genome sequence of an individual human

by Samuel Levy, Granger Sutton, Pauline C. Ng, Lars Feuk, Aaron L. Halpern, Brian P. Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F. Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R. Macdonald, Andy Wing, Chun Pang, Mary Shago, Timothy B. Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A. Kravitz, Dana A. Busam, Karen Y. Beeson, Tina C. Mcintosh, Karin A. Remington, Josep F. Abril, John Gill, Jon Borman, Yu-hui Rogers, Marvin E. Frazier, Stephen W. Scherer, Robert L. Strausberg, J. Craig Venter - PLoS Biol
"... Presented here is a genome sequence of an individual human. It was produced from;32 million random DNA fragments, sequenced by Sanger dideoxy technology and assembled into 4,528 scaffolds, comprising 2,810 million bases (Mb) of contiguous sequence with approximately 7.5-fold coverage for any given r ..."
Abstract - Cited by 293 (6 self) - Add to MetaCart
inversions, as well as numerous segmental duplications and copy number variation regions. Non-SNP DNA variation accounts for 22 % of all events identified in the donor, however they involve 74 % of all variant bases. This suggests an important role for non-SNP genetic alterations in defining the diploid

Progressivemauve: multiple genome alignment with gene gain, loss and rearrangement

by Aaron E. Darling, Bob Mau, Nicole T. Perna - Article ID e11147 , 2010
"... Background: Multiple genome alignment remains a challenging problem. Effects of recombination including rearrangement, segmental duplication, gain, and loss can create a mosaic pattern of homology even among closely related organisms. Methodology/Principal Findings: We describe a new method to align ..."
Abstract - Cited by 272 (3 self) - Add to MetaCart
Background: Multiple genome alignment remains a challenging problem. Effects of recombination including rearrangement, segmental duplication, gain, and loss can create a mosaic pattern of homology even among closely related organisms. Methodology/Principal Findings: We describe a new method

Evolution by gene duplication: an update

by Jianzhi Zhang - TRENDS Ecol Evol
"... The importance of gene duplication in supplying raw genetic material to biological evolution has been recognized since the 1930s. Recent genomic sequence data provide substantial evidence for the abundance of duplicated genes in all organisms surveyed. But how do newly duplicated genes survive and a ..."
Abstract - Cited by 143 (0 self) - Add to MetaCart
The importance of gene duplication in supplying raw genetic material to biological evolution has been recognized since the 1930s. Recent genomic sequence data provide substantial evidence for the abundance of duplicated genes in all organisms surveyed. But how do newly duplicated genes survive

An Efficient Domain-Independent Algorithm for Detecting Approximately Duplicate Database Records

by Alvaro Monge, Charles Elkan , 1997
"... Detecting database records that are approximate duplicates, but not exact duplicates, is an important task. Databases may contain duplicate records concerning the same realworld entity because of data entry errors, because of unstandardized abbreviations, or because of differences in the detailed sc ..."
Abstract - Cited by 215 (2 self) - Add to MetaCart
Detecting database records that are approximate duplicates, but not exact duplicates, is an important task. Databases may contain duplicate records concerning the same realworld entity because of data entry errors, because of unstandardized abbreviations, or because of differences in the detailed

J: Duplication and divergence: the evolution of new genes and old ideas. Annu Rev Genet 2004

by John S Taylor , Jeroen Raes
"... We have formerly seen that parts many times repeated are eminently liable to vary in number and structure; consequently it is quite probable that natural selection, during the long-continued course of modification, should have seized on a certain number of the primordially similar elements, many ti ..."
Abstract - Cited by 154 (1 self) - Add to MetaCart
times repeated, and have adapted them to the most diverse purposes. Charles Darwin, 1859 (23) I Abstract Over 35 years ago, Susumu Ohno stated that gene duplication was the single most important factor in evolution (97). He reiterated this point a few years later in proposing that without duplicated
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