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OrderPreserving Factor Analysis—Application to Longitudinal Gene
"... Abstract—We present a novel factor analysis method that can be applied to the discovery of common factors shared among trajectories in multivariate time series data. These factors satisfy a precedenceordering property: certain factors are recruited only after some other factors are activated. Pre ..."
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techniques from convex and nonconvex optimization that enforce sparsity of the factor scores and consistent precedenceorder of the factor loadings. We illustrate the orderpreserving factor analysis (OPFA) method for the problem of extracting precedenceordered factors from a longitudinal (time course
Bayes Factors
, 1995
"... In a 1935 paper, and in his book Theory of Probability, Jeffreys developed a methodology for quantifying the evidence in favor of a scientific theory. The centerpiece was a number, now called the Bayes factor, which is the posterior odds of the null hypothesis when the prior probability on the null ..."
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Cited by 1766 (74 self)
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In a 1935 paper, and in his book Theory of Probability, Jeffreys developed a methodology for quantifying the evidence in favor of a scientific theory. The centerpiece was a number, now called the Bayes factor, which is the posterior odds of the null hypothesis when the prior probability on the null
Biclustering of Expression Data
, 2000
"... An efficient nodedeletion algorithm is introduced to find submatrices... ..."
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Cited by 591 (0 self)
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An efficient nodedeletion algorithm is introduced to find submatrices...
Factoring wavelet transforms into lifting steps
 J. Fourier Anal. Appl
, 1998
"... ABSTRACT. This paper is essentially tutorial in nature. We show how any discrete wavelet transform or two band subband filtering with finite filters can be decomposed into a finite sequence of simple filtering steps, which we call lifting steps but that are also known as ladder structures. This dec ..."
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Cited by 573 (8 self)
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. This decomposition corresponds to a factorization of the polyphase matrix of the wavelet or subband filters into elementary matrices. That such a factorization is possible is wellknown to algebraists (and expressed by the formula); it is also used in linear systems theory in the electrical engineering community. We
Survey on Independent Component Analysis
 NEURAL COMPUTING SURVEYS
, 1999
"... A common problem encountered in such disciplines as statistics, data analysis, signal processing, and neural network research, is nding a suitable representation of multivariate data. For computational and conceptual simplicity, such a representation is often sought as a linear transformation of the ..."
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Cited by 2241 (104 self)
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of the original data. Wellknown linear transformation methods include, for example, principal component analysis, factor analysis, and projection pursuit. A recently developed linear transformation method is independent component analysis (ICA), in which the desired representation is the one that minimizes
A Bayesian Framework for the Analysis of Microarray Expression Data: Regularized tTest and Statistical Inferences of Gene Changes
 Bioinformatics
, 2001
"... Motivation: DNA microarrays are now capable of providing genomewide patterns of gene expression across many different conditions. The first level of analysis of these patterns requires determining whether observed differences in expression are significant or not. Current methods are unsatisfactory ..."
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Cited by 485 (6 self)
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Motivation: DNA microarrays are now capable of providing genomewide patterns of gene expression across many different conditions. The first level of analysis of these patterns requires determining whether observed differences in expression are significant or not. Current methods are unsatisfactory
Functional discovery via a compendium of expression profiles. Cell 102:109
, 2000
"... have been devised to survey gene functions en masse either computationally (Marcotte et al., 1999) or experimentally; among these, highly parallel assays of ..."
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Cited by 537 (8 self)
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have been devised to survey gene functions en masse either computationally (Marcotte et al., 1999) or experimentally; among these, highly parallel assays of
Convex Analysis
, 1970
"... In this book we aim to present, in a unified framework, a broad spectrum of mathematical theory that has grown in connection with the study of problems of optimization, equilibrium, control, and stability of linear and nonlinear systems. The title Variational Analysis reflects this breadth. For a lo ..."
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Cited by 5350 (67 self)
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In this book we aim to present, in a unified framework, a broad spectrum of mathematical theory that has grown in connection with the study of problems of optimization, equilibrium, control, and stability of linear and nonlinear systems. The title Variational Analysis reflects this breadth. For a
Probabilistic Latent Semantic Analysis
 In Proc. of Uncertainty in Artificial Intelligence, UAI’99
, 1999
"... Probabilistic Latent Semantic Analysis is a novel statistical technique for the analysis of twomode and cooccurrence data, which has applications in information retrieval and filtering, natural language processing, machine learning from text, and in related areas. Compared to standard Latent Sema ..."
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Cited by 760 (9 self)
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Probabilistic Latent Semantic Analysis is a novel statistical technique for the analysis of twomode and cooccurrence data, which has applications in information retrieval and filtering, natural language processing, machine learning from text, and in related areas. Compared to standard Latent
Clustering Gene Expression Patterns
, 1999
"... Recent advances in biotechnology allow researchers to measure expression levels for thousands of genes simultaneously, across different conditions and over time. Analysis of data produced by such experiments offers potential insight into gene function and regulatory mechanisms. A key step in the ana ..."
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Cited by 446 (11 self)
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Recent advances in biotechnology allow researchers to measure expression levels for thousands of genes simultaneously, across different conditions and over time. Analysis of data produced by such experiments offers potential insight into gene function and regulatory mechanisms. A key step
Results 1  10
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766,184