R topics documented: bconv............................................ 2 bget............................................. 3 get.genes.by.motifs..................................... 4 get.genes.by.organism.................................... 5 get.genes.by.pathway.................................... 6 get.ko.by.gene........................................ 7 get.motifs.by.gene...................................... 8 get.paralogs.by.gene..................................... 9 get.pathways.by.genes................................... 11 getBestNeighbors...................................... 12 KEGGserver........................................ 14 list.organisms........................................ 15 mark.pathway.by.objects.................................. 16 search.compounds.by.name................................. 17 search.glycans.by.name................................... 19 Index 21 1 2 bconv bconv Client-side interface to obtain the KEGG ids for external gene IDs

Description This package offers functions for propensity score estimating and weighting, nonresponse weighting, and diagnosis of the weights. This package was originally developed by Drs.

Description This package provides utility classes and methods useful when programming in R and developing R packages.

Description The package provides a number of easily parallelized functions from the fossil package. This package is designed to be used with some type of parallel computing backend, such as multicore, snow or MPI.

Description An R package for performing network meta-analyses (mixed treatment comparisons).

Description This is a package for developing heart rate variability studies of ECG records

Description The EstCRM package estimates item and person parameters

ABSTRACT. This paper describes a software package, called LOQO, which implements a primaldual interior-point method for general nonlinear programming. We focus in this paper mainly on the algorithm as it applies to linear and quadratic programming with only brief mention of the extensions to convex

R topics documented: simex-package....................................... 2 diag.block.......................................... 3 mc.matrix.......................................... 4 mcsimex........................................... 5 misclass........................................... 9 simex

Description Test in linear mixed effects models. Attention is on linear mixed effects models as implemented in the lme4 package. The package implements a parametric bootstrap test The package implements a Kenward-Roger modification of F-tests