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Brain MRI Tissue Classification Based on Local Markov Random Fields

by Jussi Tohka , Ivo D. Dinov , David W. Shattuck , Arthur W. Toga
"... A new method for tissue classification of brain magnetic resonance images (MRI) of the brain is proposed. The method is based on local image models where each models the image content in a subset of the image domain. With this local modeling approach, the assumption that tissue types have the same c ..."
Abstract - Cited by 3 (1 self) - Add to MetaCart
A new method for tissue classification of brain magnetic resonance images (MRI) of the brain is proposed. The method is based on local image models where each models the image content in a subset of the image domain. With this local modeling approach, the assumption that tissue types have the same

S.K.Warfield, “Highly Accurate Segmentation of Brain Tissue and Subcortical Gray Matter from Newborn

by Neil I Weisenfeld , Andrea U J Mewes , Simon K Warfield - MRI ,” in Proc. of the 9th Int. Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2006. 2006
"... Abstract. The segmentation of newborn brain MRI is important for assessing and directing treatment options for premature infants at risk for developmental disorders, abnormalities, or even death. Segmentation of infant brain MRI is particularly challenging when compared with the segmentation of ima ..."
Abstract - Cited by 4 (0 self) - Add to MetaCart
of images acquired from older children and adults. We sought to develop a fully automated segmentation strategy and present here a Bayesian approach utilizing an atlas of priors derived from previous segmentations and a new scheme for automatically selecting and iteratively refining classifier training data

Automatic Segmentation of Newborn Brain MRI

by Neil I. Weisenfelda, Simon K. Warfieldb
"... Quantitative brain tissue segmentation from newborn MRI offers the possibility of improved clin-ical decision making and diagnosis, new insight into the mechanisms of disease, and new methods for the evaluation of treatment protocols for preterm newborns. Such segmentation is challenging, however, d ..."
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Quantitative brain tissue segmentation from newborn MRI offers the possibility of improved clin-ical decision making and diagnosis, new insight into the mechanisms of disease, and new methods for the evaluation of treatment protocols for preterm newborns. Such segmentation is challenging, however

Automatic brain and tumor segmentation

by Nathan Moon, Elizabeth Bullitt, Koen Van Leemput, Guido Gerig - Medical Image Computing and Computer-Assisted Intervention MICCAI 2002. Volume 2489 of LNCS , 2002
"... Combining image segmentation based on statistical classification with a geometric prior has been shown to significantly increase robustness and reproducibility. Using a probabilistic geometric model of sought structures and image registration serves both initialization of probability density functio ..."
Abstract - Cited by 14 (3 self) - Add to MetaCart
of existing structures not explained by the model. Our driving application is the segmentation of brain tissue and tumors from three-dimensional magnetic resonance imaging (MRI). Our goal is a high-quality segmentation of healthy tissue and a precise delineation of tumor boundaries. We present an extension

Generalized Group Sparse Classifiers with Application in fMRI Brain Decoding

by Bernard Ng, Rafeef Abugharbieh
"... The perplexing effects of noise and high feature dimensionality greatly complicate functional magnetic resonance imaging (fMRI) classification. In this paper, we present a novel formulation for constructing “Generalized Group Sparse Classifiers ” (GSSC) to alleviate these problems. In particular, we ..."
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, we propose an extension of group LASSO that permits associations between features within (predefined) groups to be modeled. Integrating this new penalty into classifier learning enables incorporation of additional prior information beyond group structure. In the context of fMRI, GGSC provides a

Automated segmentation of mouse brain images using extended MRF

by Min Hyeok Bae, Rong Pan, Teresa Wu, Ra Badea - NeuroImage , 2009
"... We introduce an automated segmentation method, extended Markov Random Field (eMRF) to classify 21 neuroanatomical structures of mouse brain based on three dimensional (3D) magnetic resonance imaging (MRI). The image data are multispectral: T2-weighted, proton density-weighted, diffusion x, y and z w ..."
Abstract - Cited by 6 (0 self) - Add to MetaCart
We introduce an automated segmentation method, extended Markov Random Field (eMRF) to classify 21 neuroanatomical structures of mouse brain based on three dimensional (3D) magnetic resonance imaging (MRI). The image data are multispectral: T2-weighted, proton density-weighted, diffusion x, y and z

Model-Based Brain and Tumor Segmentation

by Nathan Moon, Elizabeth Bullitt, Koen Van Leemput, Guido Gerig , 2002
"... Combining image segmentation based on statistical classification with a geometric prior has been shown to significantly increase robustness and reproducibility. Using a probabilistic geometric model of sought structures and image registration serves both initialization of probability density functi ..."
Abstract - Cited by 11 (2 self) - Add to MetaCart
of existing structures. Our driving application is the segmentation of brain tissue and tumors from three-dimensional magnetic resonance imaging (MRI). We aim at both obtaining a high-quality segmentation of healthy tissue and a precise delineation of tumor boundaries. We present an extension to an existing

A spatially unbiased atlas template of the human cerebellum. NeuroImage 33(1), 127–138 (2006) M. De Craene et al

by Jörn Diedrichsen
"... This article presents a new high-resolution atlas template of the human, cerebellum and brainstem, based on the anatomy of 20 young healthy individuals. The atlas is spatially unbiased, i.e., the location of each structure is equal to the expected location of that structure across individuals in MNI ..."
Abstract - Cited by 47 (6 self) - Add to MetaCart
for an improved voxel-byvoxel normalization for functional MRI and lesion analysis. Alignment to the template requires that the cerebellum and brainstem are isolated from the surrounding tissue, a process for which an automated algorithm has been developed. Compared to normalization to the MNI whole-brain

RESEARCH ARTICLE Fully Automated Whole-Head Segmentation with Improved Smoothness and Continuity, with Theory Reviewed

by Yu Huang, Lucas C. Parra
"... Individualized current-flow models are needed for precise targeting of brain structures using transcranial electrical or magnetic stimulation (TES/TMS). The same is true for current-source reconstruction in electroencephalography and magnetoencephalography (EEG/ MEG). The first step in generating su ..."
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such models is to obtain an accurate segmentation of in-dividual head anatomy, including not only brain but also cerebrospinal fluid (CSF), skull and soft tissues, with a field of view (FOV) that covers the whole head. Currently available auto-mated segmentation tools only provide results for brain tissues

Classification of Brain Tumor Using Discrete Wavelet Transform, Principal Component Analysis and Probabilistic Neural Network

by Swapnali Sawakare, Dimple Chaudhari
"... The project proposes an automatic support system for stage classification using artificial neural network (learning machine) and to detect Brain Tumor through k-means clustering methods for medical imaging application. The detection of the Brain Tumor is a challenging problem, due to the structure o ..."
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) and sometimes pathological tissues like tumor etc. Probabilistic Neural Network with radial basis function will be employed to implement an automated Brain Tumor classification. Decision making was performed in two stages: feature extraction using GLCM and PCA and the classification
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