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Near Optimal Multiple Sequence Alignments using a Traveling Salesman Problem approach
 in SPIRE/CRIWG
, 1999
"... We present a new method for the calculation of multiple sequence alignments (MSAs). The input to our problem are n protein sequences. We assume that the sequences are related with each other and that there exists some unknown evolutionary tree that corresponds to the MSA. One advantage of our method ..."
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Cited by 7 (2 self)
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We present a new method for the calculation of multiple sequence alignments (MSAs). The input to our problem are n protein sequences. We assume that the sequences are related with each other and that there exists some unknown evolutionary tree that corresponds to the MSA. One advantage of our
A greedy algorithm for aligning DNA sequences
 J. COMPUT. BIOL
, 2000
"... For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy a ..."
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Cited by 576 (16 self)
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For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy
Globally Consistent Range Scan Alignment for Environment Mapping
 AUTONOMOUS ROBOTS
, 1997
"... A robot exploring an unknown environmentmay need to build a world model from sensor measurements. In order to integrate all the frames of sensor data, it is essential to align the data properly. An incremental approach has been typically used in the past, in which each local frame of data is alig ..."
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Cited by 536 (8 self)
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A robot exploring an unknown environmentmay need to build a world model from sensor measurements. In order to integrate all the frames of sensor data, it is essential to align the data properly. An incremental approach has been typically used in the past, in which each local frame of data
A Systematic Comparison of Various Statistical Alignment Models
 COMPUTATIONAL LINGUISTICS
, 2003
"... ..."
Near Optimal Signal Recovery From Random Projections: Universal Encoding Strategies?
, 2004
"... Suppose we are given a vector f in RN. How many linear measurements do we need to make about f to be able to recover f to within precision ɛ in the Euclidean (ℓ2) metric? Or more exactly, suppose we are interested in a class F of such objects— discrete digital signals, images, etc; how many linear m ..."
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Cited by 1513 (20 self)
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measurements do we need to recover objects from this class to within accuracy ɛ? This paper shows that if the objects of interest are sparse or compressible in the sense that the reordered entries of a signal f ∈ F decay like a powerlaw (or if the coefficient sequence of f in a fixed basis decays like a power
A Maximum Entropy approach to Natural Language Processing
 COMPUTATIONAL LINGUISTICS
, 1996
"... The concept of maximum entropy can be traced back along multiple threads to Biblical times. Only recently, however, have computers become powerful enough to permit the widescale application of this concept to real world problems in statistical estimation and pattern recognition. In this paper we des ..."
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Cited by 1341 (5 self)
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describe a method for statistical modeling based on maximum entropy. We present a maximumlikelihood approach for automatically constructing maximum entropy models and describe how to implement this approach efficiently, using as examples several problems in natural language processing.
Improved Approximation Algorithms for Maximum Cut and Satisfiability Problems Using Semidefinite Programming
 Journal of the ACM
, 1995
"... We present randomized approximation algorithms for the maximum cut (MAX CUT) and maximum 2satisfiability (MAX 2SAT) problems that always deliver solutions of expected value at least .87856 times the optimal value. These algorithms use a simple and elegant technique that randomly rounds the solution ..."
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Cited by 1231 (13 self)
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We present randomized approximation algorithms for the maximum cut (MAX CUT) and maximum 2satisfiability (MAX 2SAT) problems that always deliver solutions of expected value at least .87856 times the optimal value. These algorithms use a simple and elegant technique that randomly rounds
Basecalling of automated sequencer traces using phred. I. Accuracy Assessment
 GENOME RES
, 1998
"... The availability of massive amounts of DNA sequence information has begun to revolutionize the practice of biology. As a result, current largescale sequencing output, while impressive, is not adequate to keep pace with growing demand and, in particular, is far short of what will be required to obta ..."
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Cited by 1602 (4 self)
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The availability of massive amounts of DNA sequence information has begun to revolutionize the practice of biology. As a result, current largescale sequencing output, while impressive, is not adequate to keep pace with growing demand and, in particular, is far short of what will be required
A computational approach to edge detection
 IEEE Transactions on Pattern Analysis and Machine Intelligence
, 1986
"... AbstractThis paper describes a computational approach to edge detection. The success of the approach depends on the definition of a comprehensive set of goals for the computation of edge points. These goals must be precise enough to delimit the desired behavior of the detector while making minimal ..."
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Cited by 4621 (0 self)
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. We use the criteria in numerical optimization to derive detectors for several common image features, including step edges. On specializing the analysis to step edges, we find that there is a natural uncertainty principle between detection and localization performance, which are the two main goals
Results 1  10
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665,144