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243,767
Fast sortedset intersection using SIMD instructions
 In ADMS Workshop
, 2011
"... In this paper, we focus on sortedset intersection which is an important part in many algorithms, e.g., RIDlist intersection, inverted indexes, and others. In contrast to traditional scalar sortedset intersection algorithms that try to reduce the number of comparisons, we propose a parallel algori ..."
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Cited by 6 (0 self)
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that are available in many processors. We provide different sortedset intersection algorithms for different integer data types. We propose versions that use uncompressed integer values as input and output as well as a version that uses a tailormade data layout for even faster intersections. In our experiments, we
FAST VOLUME RENDERING USING A SHEARWARP FACTORIZATION OF THE VIEWING TRANSFORMATION
, 1995
"... Volume rendering is a technique for visualizing 3D arrays of sampled data. It has applications in areas such as medical imaging and scientific visualization, but its use has been limited by its high computational expense. Early implementations of volume rendering used bruteforce techniques that req ..."
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Cited by 541 (2 self)
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that require on the order of 100 seconds to render typical data sets on a workstation. Algorithms with optimizations that exploit coherence in the data have reduced rendering times to the range of ten seconds but are still not fast enough for interactive visualization applications. In this thesis we present a
Fast Parallel Algorithms for ShortRange Molecular Dynamics
 JOURNAL OF COMPUTATIONAL PHYSICS
, 1995
"... Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of interatomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dyn ..."
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Cited by 622 (6 self)
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Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of interatomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently  those with shortrange forces where the neighbors of each atom change rapidly. They can be implemented on any distributedmemory parallel machine which allows for messagepassing of data between independently executing processors. The algorithms are tested on a standard LennardJones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers  the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray YMP and C90 algorithm shows that the current generation of parallel machines is competitive with conventi...
The Omega Test: a fast and practical integer programming algorithm for dependence analysis
 Communications of the ACM
, 1992
"... The Omega testi s ani nteger programmi ng algori thm that can determi ne whether a dependence exi sts between two array references, and i so, under what condi7: ns. Conventi nalwi[A m holds thati nteger programmiB techni:36 are far too expensi e to be used for dependence analysi6 except as a method ..."
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Cited by 521 (15 self)
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The Omega testi s ani nteger programmi ng algori thm that can determi ne whether a dependence exi sts between two array references, and i so, under what condi7: ns. Conventi nalwi[A m holds thati nteger programmiB techni:36 are far too expensi e to be used for dependence analysi6 except as a method
The pyramid match kernel: Discriminative classification with sets of image features
 IN ICCV
, 2005
"... Discriminative learning is challenging when examples are sets of features, and the sets vary in cardinality and lack any sort of meaningful ordering. Kernelbased classification methods can learn complex decision boundaries, but a kernel over unordered set inputs must somehow solve for correspondenc ..."
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Cited by 546 (29 self)
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for correspondences – generally a computationally expensive task that becomes impractical for large set sizes. We present a new fast kernel function which maps unordered feature sets to multiresolution histograms and computes a weighted histogram intersection in this space. This “pyramid match” computation is linear
Finding community structure in networks using the eigenvectors of matrices
, 2006
"... We consider the problem of detecting communities or modules in networks, groups of vertices with a higherthanaverage density of edges connecting them. Previous work indicates that a robust approach to this problem is the maximization of the benefit function known as “modularity ” over possible div ..."
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Cited by 500 (0 self)
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We consider the problem of detecting communities or modules in networks, groups of vertices with a higherthanaverage density of edges connecting them. Previous work indicates that a robust approach to this problem is the maximization of the benefit function known as “modularity ” over possible divisions of a network. Here we show that this maximization process can be written in terms of the eigenspectrum of a matrix we call the modularity matrix, which plays a role in community detection similar to that played by the graph Laplacian in graph partitioning calculations. This result leads us to a number of possible algorithms for detecting community structure, as well as several other results, including a spectral measure of bipartite structure in networks and a new centrality measure that identifies those vertices that occupy central positions within the communities to which they belong. The algorithms and measures proposed are illustrated with applications to a variety of realworld complex networks.
On the Resemblance and Containment of Documents
 In Compression and Complexity of Sequences (SEQUENCES’97
, 1997
"... Given two documents A and B we define two mathematical notions: their resemblance r(A, B)andtheircontainment c(A, B) that seem to capture well the informal notions of "roughly the same" and "roughly contained." The basic idea is to reduce these issues to set intersection probl ..."
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Cited by 499 (7 self)
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Given two documents A and B we define two mathematical notions: their resemblance r(A, B)andtheircontainment c(A, B) that seem to capture well the informal notions of "roughly the same" and "roughly contained." The basic idea is to reduce these issues to set intersection
Do investmentcash flow sensitivities provide useful measures of financing constraints?
 QUARTERLY JOURNAL OF ECONOMICS
, 1997
"... No. This paper investigates the relationship between financing constraints and investmentcash flow sensitivities by analyzing the firms identified by Fazzari, Hubbard, and Petersen as having unusually high investmentcash flow sensitivities. We Quarterlynd that firms that appear less Quarterlynanci ..."
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Cited by 656 (8 self)
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as evidence that firms are more financially constrained. These findings call into question the interpretation of most previous research that uses this methodology. “Our financial position is sound... Most of the company’s funds are generated by operations and these funds grew at an average annual rate of 29
Basecalling of automated sequencer traces using phred. I. Accuracy Assessment
 GENOME RES
, 1998
"... The availability of massive amounts of DNA sequence information has begun to revolutionize the practice of biology. As a result, current largescale sequencing output, while impressive, is not adequate to keep pace with growing demand and, in particular, is far short of what will be required to obta ..."
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Cited by 1602 (4 self)
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accuracy. phred appears to be the first basecalling program to achieve a lower error rate than the ABI software, averaging 40%–50 % fewer errors in the data sets examined independent of position in read, machine running conditions, or sequencing chemistry.
A survey of generalpurpose computation on graphics hardware
, 2007
"... The rapid increase in the performance of graphics hardware, coupled with recent improvements in its programmability, have made graphics hardware acompelling platform for computationally demanding tasks in awide variety of application domains. In this report, we describe, summarize, and analyze the l ..."
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Cited by 545 (18 self)
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the main body of this report at two separate audiences. First, we describe the techniques used in mapping generalpurpose computation to graphics hardware. We believe these techniques will be generally useful for researchers who plan to develop the next generation of GPGPU algorithms and techniques. Second
Results 1  10
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243,767