• Documents
  • Authors
  • Tables
  • Log in
  • Sign up
  • MetaCart
  • Donate

CiteSeerX logo

Tools

Sorted by:
Try your query at:
Semantic Scholar Scholar Academic
Google Bing DBLP
Results 1 - 10 of 360
Next 10 →

Babelomics 5.0: functional interpretation for new generations of genomic data

by Roberto Alonso, Francisco Salavert, Francisco Garcia-garcia, Jose Carbonell-caballero, Marta Bleda, Luz Garcia-alonso, Alba Sanchis-juan, Daniel Perez-gil, Pablo Marin-garcia, Ruben Sanchez, Cankut Cubuk, R. Hidalgo, Alicia Amadoz, Rosa D. Hernansaiz-ballesteros, Joaquin Tarraga, David Montaner, Ignacio Medina, Joaquin Dopazo , 2015
"... Babelomics has been running for more than one decade offering a user-friendly interface for the func-tional analysis of gene expression and genomic data. Here we present its fifth release, which includes sup-port for Next Generation Sequencing data including gene expression (RNA-seq), exome or genom ..."
Abstract - Add to MetaCart
Babelomics has been running for more than one decade offering a user-friendly interface for the func-tional analysis of gene expression and genomic data. Here we present its fifth release, which includes sup-port for Next Generation Sequencing data including gene expression (RNA-seq), exome

Whom You Know Matters: Venture Capital Networks and Investment Performance,

by Yael Hochberg , Alexander Ljungqvist , Yang Lu , Steve Drucker , Jan Eberly , Eric Green , Yaniv Grinstein , Josh Lerner , Laura Lindsey , Max Maksimovic , Roni Michaely , Maureen O'hara , Ludo Phalippou Mitch Petersen , Jesper Sorensen , Per Strömberg Morten Sorensen , Yael Hochberg , Johnson - Journal of Finance , 2007
"... Abstract Many financial markets are characterized by strong relationships and networks, rather than arm's-length, spot-market transactions. We examine the performance consequences of this organizational choice in the context of relationships established when VCs syndicate portfolio company inv ..."
Abstract - Cited by 138 (8 self) - Add to MetaCart
. Throughout most of the 1990s, New Enterprise Associates had the highest betweenness centrality scores (standing "between" approximately 6% of all possible VC pairs), only to be overtaken by Intel Capital, the venture capital arm of Intel Corp, in 1999. 17 Since Venture Economics' data

Simplivariate Models: Uncovering the Underlying Biology in Functional Genomics Data

by Edoardo Saccenti, Johan A. Westerhuis, Age K. Smilde, Mariët J. Van Der Werf, Jos A. Hageman, Margriet M. W. B. Hendriks , 2010
"... One of the first steps in analyzing high-dimensional functional genomics data is an exploratory analysis of such data. Cluster Analysis and Principal Component Analysis are then usually the method of choice. Despite their versatility they also have a severe drawback: they do not always generate simp ..."
Abstract - Cited by 1 (1 self) - Add to MetaCart
interpretable simplivariate components. We present a new implementation of the recently introduced simplivariate models. In this implementation, the informative variation is described by multiplicative models that can adequately represent the relations between functional genomics data. Both a simulated and two

Genome-wide association analysis identifies 13 new risk loci for schizophrenia.

by Stephan Ripke - Nat. Genet. , 2013
"... Schizophrenia is an idiopathic mental disorder with a heritable component and a substantial public health impact. We conducted a multi-stage genome-wide association study (GWAS) for schizophrenia beginning with a Swedish national sample (5,00 cases and 6,243 controls) followed by meta-analysis with ..."
Abstract - Cited by 32 (1 self) - Add to MetaCart
for at least 32% of the variance in liability. Common genetic variation has an important role in the etiology of schizophrenia, and larger studies will allow more detailed understanding of this disorder. significance RESULTS Results for Swedish samples We analyzed genome-wide SNP data in 5,001 schizophrenia

SOFTWARE Open Access Genomics Portals: integrative web-platform for mining genomics data

by Kaustubh Shinde, Mukta Phatak, Freudenberg M Johannes, Jing Chen, Qian Li, Joshi K Vineet, Zhen Hu, Krishnendu Ghosh, Jaroslaw Meller, Mario Medvedovic
"... Background: A large amount of experimental data generated by modern high-throughput technologies is available through various public repositories. Our knowledge about molecular interaction networks, functional biological pathways and transcriptional regulatory modules is rapidly expanding, and is be ..."
Abstract - Add to MetaCart
: The integrated access to primary genomics data, functional knowledge and analytical tools makes Genomics Portals platform a unique tool for interpreting results of new genomics experiments and for mining the vast amount of data stored in the Genomics Portals backend databases. Genomics Portals can be accessed

likelihood and the role of models in molecular phylogenetics.

by Mike Steel , David Penny - Mol. Biol. Evol. , 2000
"... Methods such as maximum parsimony (MP) are frequently criticized as being statistically unsound and not being based on any ''model.'' On the other hand, advocates of MP claim that maximum likelihood (ML) has some fundamental problems. Here, we explore the connection between the ..."
Abstract - Cited by 70 (11 self) - Add to MetaCart
of new types of genome data, e.g., gene order and short interspersed nuclear elements (SINEs), for which MP may be more appropriate. Concern about the computational complexity of ML. Even on a given tree, optimizing the likelihood can be problematic (unlike with MP, for which Fitch's [1971b

RESEARCH ARTICLE Open Access New resources for functional analysis of omics data for the genus Aspergillus

by Benjamin M Nitsche, Jonathan Crabtree, Gustavo C Cerqueira, Vera Meyer, Arthur Fj Ram, Jennifer R Wortman
"... Background: Detailed and comprehensive genome annotation can be considered a prerequisite for effective analysis and interpretation of omics data. As such, Gene Ontology (GO) annotation has become a well accepted framework for functional annotation. The genus Aspergillus comprises fungal species tha ..."
Abstract - Add to MetaCart
Background: Detailed and comprehensive genome annotation can be considered a prerequisite for effective analysis and interpretation of omics data. As such, Gene Ontology (GO) annotation has become a well accepted framework for functional annotation. The genus Aspergillus comprises fungal species

VarWalker: personalized mutation network analysis of putative cancer genes fromnext-generation sequencing data,” PLoS

by Peilin Jia, Zhongming Zhao - Article ID e1003460 , 2014
"... A major challenge in interpreting the large volume of mutation data identified by next-generation sequencing (NGS) is to distinguish driver mutations from neutral passenger mutations to facilitate the identification of targetable genes and new drugs. Current approaches are primarily based on mutatio ..."
Abstract - Cited by 9 (3 self) - Add to MetaCart
A major challenge in interpreting the large volume of mutation data identified by next-generation sequencing (NGS) is to distinguish driver mutations from neutral passenger mutations to facilitate the identification of targetable genes and new drugs. Current approaches are primarily based

New generation of elastic network models ScienceDirect Trends in ENM development

by José Ramó , Pablo Ló Pez-Blanco , Chacó , 2016
"... The intrinsic flexibility of proteins and nucleic acids can be grasped from remarkably simple mechanical models of particles connected by springs. In recent decades, Elastic Network Models (ENMs) combined with Normal Model Analysis widely confirmed their ability to predict biologically relevant mot ..."
Abstract - Add to MetaCart
conformational changes, and assisting in the interpretation of structural experimental data, paying close attention to hybrid Trends in ENM development The agreement between the observed functional motions and the lowest frequency modes extracted with NMA is relatively well preserved independently of model

MetAlgNet:Metabolic Pathway Network Reconstruction from Algae Genome Annotation Data

by Kirtan Dave, Hetalkumar Panchal , 2015
"... Abstract: Post-genomic molecular biology embodies high-throughput experimental techniques and hence it is a data-rich field. The goal of development of this tool is to utilize free available biological data of green algae in order to produce new metabolic pathway knowledge and to aid mining of newly ..."
Abstract - Add to MetaCart
of newly generated data. The variety of biological sequence and functional information are stored in different online database, so getting annotation information of genome from different database is challenging task for reconstruction of pathways. Here we apply data integration approach to provide rich
Next 10 →
Results 1 - 10 of 360
Powered by: Apache Solr
  • About CiteSeerX
  • Submit and Index Documents
  • Privacy Policy
  • Help
  • Data
  • Source
  • Contact Us

Developed at and hosted by The College of Information Sciences and Technology

© 2007-2016 The Pennsylvania State University