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Approximating the Maximum Isomorphic Agreement Subtree is Hard
"... The Maximum Isomorphic Agreement Subtree (MIT) problem is one of the simplest versions of the Maximum Interval Weight Agreement Subtree method (MIWT) which is used to compare phylogenies. More precisely MIT allows to provide a subset of the species such that the exact distances between species in ..."
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Cited by 3 (0 self)
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The Maximum Isomorphic Agreement Subtree (MIT) problem is one of the simplest versions of the Maximum Interval Weight Agreement Subtree method (MIWT) which is used to compare phylogenies. More precisely MIT allows to provide a subset of the species such that the exact distances between species
Approximate Signal Processing
, 1997
"... It is increasingly important to structure signal processing algorithms and systems to allow for trading off between the accuracy of results and the utilization of resources in their implementation. In any particular context, there are typically a variety of heuristic approaches to managing these tra ..."
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Cited by 517 (2 self)
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these tradeoffs. One of the objectives of this paper is to suggest that there is the potential for developing a more formal approach, including utilizing current research in Computer Science on Approximate Processing and one of its central concepts, Incremental Refinement. Toward this end, we first summarize a
An Optimal Algorithm for Approximate Nearest Neighbor Searching in Fixed Dimensions
 ACMSIAM SYMPOSIUM ON DISCRETE ALGORITHMS
, 1994
"... Consider a set S of n data points in real ddimensional space, R d , where distances are measured using any Minkowski metric. In nearest neighbor searching we preprocess S into a data structure, so that given any query point q 2 R d , the closest point of S to q can be reported quickly. Given any po ..."
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Cited by 987 (32 self)
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positive real ffl, a data point p is a (1 + ffl)approximate nearest neighbor of q if its distance from q is within a factor of (1 + ffl) of the distance to the true nearest neighbor. We show that it is possible to preprocess a set of n points in R d in O(dn log n) time and O(dn) space, so that given a
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
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Cited by 2109 (30 self)
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of the topology and branch lengths, only a few iterations are sufficient to reach an optimum. We used extensive and realistic computer simulations to show that the topological accuracy of this new method is at least as high as that of the existing maximumlikelihood programs and much higher than the performance
Property Testing and its connection to Learning and Approximation
"... We study the question of determining whether an unknown function has a particular property or is fflfar from any function with that property. A property testing algorithm is given a sample of the value of the function on instances drawn according to some distribution, and possibly may query the fun ..."
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Cited by 506 (69 self)
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We study the question of determining whether an unknown function has a particular property or is fflfar from any function with that property. A property testing algorithm is given a sample of the value of the function on instances drawn according to some distribution, and possibly may query the function on instances of its choice. First, we establish some connections between property testing and problems in learning theory. Next, we focus on testing graph properties, and devise algorithms to test whether a graph has properties such as being kcolorable or having a aeclique (clique of density ae w.r.t the vertex set). Our graph property testing algorithms are probabilistic and make assertions which are correct with high probability, utilizing only poly(1=ffl) edgequeries into the graph, where ffl is the distance parameter. Moreover, the property testing algorithms can be used to efficiently (i.e., in time linear in the number of vertices) construct partitions of the graph which corre...
Constructing Free Energy Approximations and Generalized Belief Propagation Algorithms
 IEEE Transactions on Information Theory
, 2005
"... Important inference problems in statistical physics, computer vision, errorcorrecting coding theory, and artificial intelligence can all be reformulated as the computation of marginal probabilities on factor graphs. The belief propagation (BP) algorithm is an efficient way to solve these problems t ..."
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Cited by 588 (13 self)
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that is exact when the factor graph is a tree, but only approximate when the factor graph has cycles. We show that BP fixed points correspond to the stationary points of the Bethe approximation of the free energy for a factor graph. We explain how to obtain regionbased free energy approximations that improve
Training Products of Experts by Minimizing Contrastive Divergence
, 2002
"... It is possible to combine multiple latentvariable models of the same data by multiplying their probability distributions together and then renormalizing. This way of combining individual “expert ” models makes it hard to generate samples from the combined model but easy to infer the values of the l ..."
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Cited by 831 (79 self)
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is unnecessary. Training a PoE by maximizing the likelihood of the data is difficult because it is hard even to approximate the derivatives of the renormalization term in the combination rule. Fortunately, a PoE can be trained using a different objective function called “contrastive divergence ” whose
Imagenet: A largescale hierarchical image database
 In CVPR
, 2009
"... The explosion of image data on the Internet has the potential to foster more sophisticated and robust models and algorithms to index, retrieve, organize and interact with images and multimedia data. But exactly how such data can be harnessed and organized remains a critical problem. We introduce her ..."
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Cited by 808 (29 self)
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of annotated images organized by the semantic hierarchy of WordNet. This paper offers a detailed analysis of ImageNet in its current state: 12 subtrees with 5247 synsets and 3.2 million images in total. We show that ImageNet is much larger in scale and diversity and much more accurate than the current image
Wireless Communications
, 2005
"... Copyright c ○ 2005 by Cambridge University Press. This material is in copyright. Subject to statutory exception and to the provisions of relevant collective licensing agreements, no reproduction of any part may take place without the written permission of Cambridge University ..."
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Cited by 1129 (32 self)
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Copyright c ○ 2005 by Cambridge University Press. This material is in copyright. Subject to statutory exception and to the provisions of relevant collective licensing agreements, no reproduction of any part may take place without the written permission of Cambridge University
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