Searching for authors named "Christophe Roos" – sorted by Relevance.

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6 documents found, showing 1 through 6.

Associative Clustering to Find Dependencies between Expression Profiles and Transcription Factor Binding
by Janne Nikkilä, Christophe Roos, Janne Sinkkonen, Samuel Kaski — 2003
…this paper is complementary, and meant to serve in particular the first exploratory "looking at" a new data before constructing more detailed structured models. We cluster genes with associative clustering (AC), which is an extension of the previously published discriminative clustering [5]. AC is …
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Exploring Dependencies between Yeast Stress Genes and their Regulators
by Janne Nikkilä, Christophe Roos, Samuel Kaski — in Proc. Int. Conf. Intelligent Data Engineering and Automated Learning (IDEAL 2004
…An environmental stress response gene should, by definition, have common properties in its behavior across di#erent stress treatments.…
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Discriminative Clustering of Yeast Stress Response
by Samuel Kaski, Janne Nikkilä, Eerika Savia, Christophe Roos — 2005 — In Bioinformatics using Computational Intelligence Paradigms
…this paper we adopt the term from [1], and call them CER genes…
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Integration Of Transcription Factor Binding And Gene Expression By Associative Clustering
by Janne Nikkil Christophe, Christophe Roos, Samuel Kaski
…We integrate paired genomic data sets to reveal their dependencies. We suggest using a dependency-maximizing clustering method for the task. The recently introduced method associative clustering (AC) finds groupings of genes for which the two data sources are maximally dependent. The dependencies b…
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Exploratory Modeling of Yeast Stress Response and Its Regulation with gCCA and Associative Clustering
by Janne Nikkilä, Janne Nikkil Ä, Christophe Roos, Eerika Savia, Samuel Kaski — 2005
…Introduction Integration of multiple information sources is becoming increasingly important in bioinformatics. It has become evident that most of the important questions in molecular and cell biology cannot be answered by studying a single data source, like DNA sequence or gene expression. Due to c…
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Associative clustering for exploring dependencies between functional genomics data sets
by Samuel Kaski, Samuel Kaski, Janne Nikkilä, Janne Nikkilä, Janne Sinkkonen, Janne Sinkkonen, Leo Lahti, Leo Lahti, Juha E. A. Knuuttila, Christophe Roos — 2005 — IEEE/ACM Transactions on Computational Biology and Bioinformatics
…Part 2, vol. 2, no. 3, pages 203–216, 2005. This material is posted here with permission of the IEEE. Such permission of the IEEE does not in any way imply IEEE endorsement of any of Helsinki University of Technology’s products or services. Internal or personal use of this material is permitted. How…
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